Difference between revisions of "Test graph - BioConductor package dependancies"

Revision as of 12:46, 26 September 2007

gpls NONE sigPathway R TypeInfo methods Biostrings R Biostrings methods Mfuzz R Mfuzz Biobase Mfuzz e1071 LMGene R LMGene Biobase LMGene multtest LMGene survival ecolitk R ecolitk affy ecolitk ecoliLeucine ecolitk ecolicdf ecolitk Biobase maCorrPlot NONE OLINgui R OLINgui OLIN xcms R xcms methods rflowcyt R rflowcyt survival rflowcyt xtable rflowcyt stats rflowcyt KernSmooth rflowcyt MASS rflowcyt grid rflowcyt methods rflowcyt hexbin rflowcyt rfcdmin rflowcyt fields rflowcyt lattice rflowcyt locfit daMA MASS made4 ade4 made4 scatterplot3d biomaRt methods biomaRt XML biomaRt RCurl gaggle R gaggle rJava gaggle graph affylmGUI limma affylmGUI tcltk affylmGUI affy affylmGUI Biobase SAGElyzer R SAGElyzer AnnBuilder SAGElyzer tkWidgets SAGElyzer genefilter SAGElyzer annotate GeneR NONE GeneSpring R GeneSpring Biobase GeneSpring methods geneplotter R geneplotter annotate geneplotter Biobase geneplotter methods Rdbi R BioMVCClass R BioMVCClass methods BioMVCClass MVCClass BioMVCClass Biobase BioMVCClass graph BioMVCClass Rgraphviz sizepower stats PROcess Icens snapCGH limma snapCGH tilingArray snapCGH DNAcopy snapCGH aCGH snapCGH GLAD snapCGH cluster snapCGH methods bioDist R bioDist methods bioDist Biobase marray R marray limma marray methods tkWidgets R tkWidgets methods tkWidgets widgetTools tkWidgets DynDoc rama NONE Ruuid R Ruuid methods arrayQuality R arrayQuality marray arrayQuality limma arrayQuality convert arrayQuality hexbin arrayQuality gridBase arrayQuality RColorBrewer GraphAT MCMCpack GraphAT graph beadarray limma beadarray Biobase beadarray affy beadarray methods ppiStats apComplex ppiStats GO ppiStats GOstats ppiStats YEAST ppiStats graph ppiStats Rgraphviz ppiStats Category pcaMethods R pcaMethods MASS pcaMethods ellipse pcaMethods pls pcaMethods methods RankProd R GlobalAncova methods webbioc R webbioc Biobase webbioc affy webbioc multtest webbioc annaffy webbioc vsn webbioc gcrma webbioc qvalue cghMCR methods cghMCR DNAcopy cghMCR marray cghMCR arrayQuality widgetInvoke methods widgetInvoke XML widgetInvoke RGtk hexbin R hexbin methods hexbin grid hexbin lattice hexbin colorspace matchprobes R matchprobes Biobase matchprobes affy siggenes methods siggenes multtest siggenes Biobase AnnBuilder R AnnBuilder methods AnnBuilder Biobase AnnBuilder XML AnnBuilder annotate AnnBuilder utils AnnBuilder RSQLite pamr NONE RBGL graph RBGL methods biocViews R biocViews methods biocViews tools biocViews graph biocViews RBGL biocViews XML CoCiteStats R CoCiteStats humanLLMappings ChromoViz RSvgDevice ChromoViz XML GOstats graph GOstats GO GOstats annotate GOstats RBGL GOstats Biobase GOstats Category GOstats methods prada R prada Biobase prada RColorBrewer prada grid prada methods prada geneplotter bridge R bridge rama affxparser R ontoTools R ontoTools methods ontoTools graph ontoTools SparseM ontoTools GO ontoTools Biobase ontoTools annotate MCRestimate R MCRestimate e1071 MCRestimate pamr MCRestimate randomForest MCRestimate RColorBrewer MCRestimate Biobase MCRestimate golubEsets aroma.light R.oo pkgDepTools methods pkgDepTools graph pkgDepTools RBGL MeasurementError.cor NONE lapmix R logicFS LogicReg impute R copa Biobase copa methods Category Biobase Category KEGG Category GO Category graph Category annotate Category methods Category genefilter Harshlight R Harshlight affy OrderedList R OrderedList Biobase OrderedList twilight MVCClass R MVCClass methods panp affy LPE NONE MANOR R MANOR GLAD RbcBook1 Biobase vsn R vsn Biobase iSPlot R iSPlot methods iSPlot RGtk iSPlot gtkDevice iSPlot MVCClass pickgene MASS makecdfenv R makecdfenv methods makecdfenv Biobase makecdfenv affy makecdfenv utils makecdfenv affyio aCGH R aCGH cluster aCGH survival aCGH multtest aCGH sma KEGGSOAP methods KEGGSOAP XML KEGGSOAP SSOAP KEGGSOAP RCurl annotate R annotate methods annotate Biobase limma R limma methods timecourse R timecourse limma timecourse MASS timecourse Biobase timecourse methods qvalue R nem R nem e1071 nem graph nem Rgraphviz nem RBGL HEM R HEM Biobase SBMLR XML SBMLR odesolve MLInterfaces R MLInterfaces Biobase MLInterfaces methods MLInterfaces genefilter weaver R weaver digest weaver tools weaver utils weaver codetools goTools Biobase goTools annotate goTools GO applera R applera Biobase applera methods applera affy applera genefilter applera limma applera geneplotter applera RColorBrewer applera prada applera combinat annaffy R annaffy methods annaffy Biobase annaffy GO annaffy KEGG spotSegmentation R spotSegmentation mclust geneRecommender R geneRecommender Biobase codelink R codelink methods codelink limma codelink annotate widgetTools R widgetTools methods widgetTools utils splots R splots grid RSNPper methods RSNPper utils RSNPper tools RSNPper XML GeneMeta R GeneMeta methods GeneMeta Biobase GeneMeta genefilter GEOquery methods globaltest R globaltest methods globaltest graphics globaltest multtest pathRender graph pathRender Rgraphviz pathRender cMAP convert R convert Biobase convert limma convert marray convert utils convert methods MantelCorr R stam R stam GO stam Biobase stam pamr stam cluster stam annaffy stam methods BSgenome R BSgenome methods BSgenome Biostrings pdmclass Biobase pdmclass R pdmclass fibroEset pdmclass mda cellHTS R cellHTS prada cellHTS RColorBrewer cellHTS Biobase cellHTS genefilter metaArray MergeMaid EBImage R EBImage methods arrayQCplot RGtk2 arrayQCplot cairoDevice arrayQCplot LPE hopach R hopach cluster hopach Biobase DNAcopy NONE ssize gdata ssize xtable apComplex graph tilingArray R tilingArray methods tilingArray Biobase tilingArray affy tilingArray RColorBrewer tilingArray grid tilingArray strucchange tilingArray vsn tilingArray genefilter tilingArray geneplotter tilingArray pixmap RMAPPER methods splicegear R splicegear methods splicegear utils splicegear grid splicegear Biobase splicegear XML splicegear annotate gff3Plotter R gff3Plotter methods mmgmos R mmgmos methods mmgmos Biobase mmgmos affy plgem R plgem Biobase plgem MASS DEDS R DEDS methods pgUtils R pgUtils Rdbi pgUtils RdbiPgSQL pgUtils methods hypergraph R hypergraph methods hypergraph graph arrayMagic R arrayMagic methods arrayMagic utils arrayMagic Biobase arrayMagic vsn arrayMagic limma arrayMagic genefilter nudge stats sscore R sscore affy sscore affxparser simulatorAPMS graph simulatorAPMS apComplex simulatorAPMS Rgraphviz simulatorAPMS ScISI simulatorAPMS ppiStats affy R affy Biobase affy methods affy utils affy affyio OCplus R OCplus akima OCplus multtest diffGeneAnalysis minpack.lm macat Biobase macat annotate idiogram R idiogram methods idiogram Biobase idiogram annotate pcot2 R pcot2 grDevices pcot2 Biobase pcot2 amap iSNetwork R iSNetwork methods iSNetwork graph iSNetwork Rgraphviz iSNetwork RGtk iSNetwork gtkDevice iSNetwork BioMVCClass iSNetwork MVCClass iSNetwork Biobase iSNetwork annotate affyPLM R affyPLM affy affyPLM affydata affyPLM Biobase affyPLM methods affyPLM gcrma spikeLI utils genefilter R genefilter methods genefilter Biobase genefilter survival altcdfenvs R altcdfenvs methods altcdfenvs Biobase altcdfenvs affy altcdfenvs matchprobes altcdfenvs makecdfenv OLIN R OLIN methods OLIN stats OLIN locfit OLIN Biobase OLIN marray beadarraySNP methods beadarraySNP Biobase beadarraySNP limma beadarraySNP quantsmooth Heatplus NONE GeneTS R GeneTS GeneCycle GeneTS GeneNet safe R safe methods safe Biobase Rgraphviz R Rgraphviz methods Rgraphviz graph Rgraphviz geneplotter RdbiPgSQL R RdbiPgSQL Rdbi twilight R twilight splines twilight stats GeneTraffic R GeneTraffic Biobase GeneTraffic affy GeneTraffic marray GeneTraffic SSOAP GeneTraffic XML GeneTraffic digest GeneTraffic methods simpleaffy R simpleaffy affy simpleaffy genefilter maSigPro R maSigPro Biobase Icens survival Rredland methods Rredland graph graph R graph methods nnNorm R nnNorm nnet nnNorm marray genArise R genArise locfit genArise tkrplot genArise xtable genArise methods EBarrays R EBarrays Biobase EBarrays methods EBarrays utils EBarrays lattice reb R reb Biobase reb idiogram SAGx R SAGx stats SAGx multtest SAGx sma SAGx methods maanova R RMAGEML marray RMAGEML limma RMAGEML Biobase affyio methods edd methods edd golubEsets edd Biobase edd class edd nnet edd xtable maDB R maDB Biobase maDB affy maDB limma maDB methods DynDoc methods DynDoc tools BeadExplorer R BeadExplorer methods BeadExplorer widgetTools BeadExplorer affy BeadExplorer R2HTML BeadExplorer grDevices BeadExplorer tkWidgets affycoretools affy affycoretools limma affycoretools GOstats affycoretools biomaRt limmaGUI limma limmaGUI tcltk ABarray Biobase ABarray multtest GGtools R GGtools methods GGtools Biobase GGtools hgfocus GGtools geneplotter Biobase R Biobase tools Biobase methods Biobase utils factDesign Biobase factDesign affy factDesign stats sagenhaft R sagenhaft SparseM ROC R ROC utils ROC methods bim stats bim qtl gcrma R gcrma Biobase gcrma affy gcrma matchprobes gcrma splines adSplit R adSplit methods adSplit stats adSplit cluster adSplit multtest adSplit Biobase adSplit affy adSplit GO adSplit KEGG Resourcerer R Resourcerer AnnBuilder GLAD R MergeMaid R MergeMaid survival MergeMaid Biobase MergeMaid MASS MergeMaid methods plier R plier affy quantsmooth quantreg quantsmooth lodplot affycomp R affycomp Biobase stepNorm R stepNorm marray stepNorm MASS stepNorm methods clusterStab Biobase clusterStab R clusterStab methods affyQCReport R affyQCReport Biobase affyQCReport affy affyQCReport simpleaffy affypdnn R affypdnn affy affypdnn affydata affypdnn hgu95av2probe affydata R affydata affy pairseqsim methods pairseqsim stats fdrame NONE ScISI methods ScISI apComplex ScISI GO ScISI GOstats ScISI graph ScISI RBGL ScISI Rgraphviz ScISI YEAST ScISI xtable multtest R multtest methods multtest Biobase multtest survival ctc NONE yeastExpData R yeastExpData graph golubEsets Biobase estrogen R estrogen affy MAQCsubset Biobase fibroEset Biobase HEEBOdata NONE facsDorit R facsDorit prada Iyer517 Biobase stjudem R stjudem utils ProData R ProData Biobase SpikeIn R SpikeIn affy ALL Biobase faahKO R AmpAffyExample R AmpAffyExample affy rfcdmin R hgu2beta7 R kidpack R kidpack Biobase CLL R CLL affy CLL Biobase SpikeInSubset R SpikeInSubset Biobase SpikeInSubset affy gaschYHS Biobase ALLMLL R ALLMLL affy bronchialIL13 affy beta7 R beta7 marray lungExpression R lungExpression Biobase HIVcDNAvantWout03 NONE yeastCC Biobase harbChIP Biobase ppiData Rgraphviz ppiData graph lymphoma R colonCA Biobase SNAData R SNAData graph ecoliLeucine R ecoliLeucine affy davidTiling R davidTiling Biobase davidTiling tilingArray davidTiling GO MEEBOdata NONE GGdata R GGdata Biobase GGdata hgfocus rn230rnentrezgprobe R rn230rnentrezgprobe matchprobes rn230brnrefseqprobe R rn230brnrefseqprobe matchprobes dmgenome1dmense utils medicagoprobe R medicagoprobe matchprobes dmgenome1dmugcdf utils hsex10stv2ptentrezg utils caninecdf utils mm430ammensgcdf utils mm430ammrefseqcdf utils hsfocushsenstprobe R hsfocushsenstprobe matchprobes ath1121501 R hs133bhsentrezgprobe R hs133bhsentrezgprobe matchprobes drzebrafishdrugcdf utils mm430ammentrezg utils hgu133bprobe R hgu133bprobe matchprobes mmex10stv1mmentrezgprobe R mmex10stv1mmentrezgprobe matchprobes rn34arnenseprobe R rn34arnenseprobe matchprobes soybeancdf utils hs133xptensgprobe R hs133xptensgprobe matchprobes rgug4105a R rtu34probe R rtu34probe matchprobes hsex10stv2hsensgcdf utils rnex10stv1rnensecdf utils mm11ksubbmmentrezgcdf utils mu6500subdcdf utils mm74av2mmensgcdf utils mm74bv2mmentrezgcdf utils rn230rnenstprobe R rn230rnenstprobe matchprobes h10kcod R hs95av2hsrefseq utils hsex10stv2hsentrezg utils mm430bmmenstprobe R mm430bmmenstprobe matchprobes hsex10stv2hsense utils mm74av2mmentrezg utils BSgenome.Dmelanogaster.BDGP.Release5 R BSgenome.Dmelanogaster.BDGP.Release5 methods BSgenome.Dmelanogaster.BDGP.Release5 Biostrings BSgenome.Dmelanogaster.BDGP.Release5 BSgenome dmgenome1dmensg utils rgu34a R mm430bmmensecdf utils dmehomology R mm430mmensgcdf utils hu35ksubaprobe R hu35ksubaprobe matchprobes rn230brnensgprobe R rn230brnensgprobe matchprobes hsex10stv2ptense utils osriceostigrprobe R osriceostigrprobe matchprobes hsex10stv2hsentrezgprobe R hsex10stv2hsentrezgprobe matchprobes cfcanine2cfenstprobe R cfcanine2cfenstprobe matchprobes mm430mmentrezg utils mm74av1mmrefseqprobe R mm74av1mmrefseqprobe matchprobes rnex10stv1rnrefseq utils atgenomeattaircdf utils zmahomology R rgu34b R hs133xptensgcdf utils mu19ksubccdf utils hgu95ecdf utils atgenomeatrefseqcdf utils hs133phsrefseqprobe R hs133phsrefseqprobe matchprobes hsex10stv2hsensg utils hs133xptentrezg utils saureusprobe R saureusprobe matchprobes hs133av2hsenseprobe R hs133av2hsenseprobe matchprobes rhesusprobe R rhesusprobe matchprobes mm74av2mmense utils mm11ksubammenstcdf utils hguqiagenv3 R rgu34c R mmex10stv1mmrefseq utils cfcanine2cfentrezgcdf utils ggchickenggenstprobe R ggchickenggenstprobe matchprobes cyp450cdf utils hsex10stv2ptensg utils hs133pptenseprobe R hs133pptenseprobe matchprobes hs133xhsensgcdf utils poplarcdf utils dmdrosophila2dmrefseqprobe R dmdrosophila2dmrefseqprobe matchprobes hs95av2hsrefseqprobe R hs95av2hsrefseqprobe matchprobes hs133xhsentrezg utils hgug4100a R mm11ksubammugcdf utils mm74av2mmensg utils rgug4130a R hsex10stv2hsenstprobe R hsex10stv2hsenstprobe matchprobes mgu74cprobe R mgu74cprobe matchprobes mwgcod R hsfocushsenseprobe R hsfocushsenseprobe matchprobes mm24kresogen R hs133bhsentrezgcdf utils mmex10stv1mmense utils mm11ksubammenstprobe R mm11ksubammenstprobe matchprobes hs133av2ptensgprobe R hs133av2ptensgprobe matchprobes osahomology R drzebrafishdrense utils mm430mmrefseqcdf utils cfcanine2cfenstcdf utils hs133aptenstcdf utils rn230rnenseprobe R rn230rnenseprobe matchprobes mm430bmmenseprobe R mm430bmmenseprobe matchprobes mm74av1mmug utils bovinecdf utils drzebrafishdrensecdf utils dmgenome1dmensecdf utils rae230bcdf utils hu6800cdf utils ath1attairprobe R ath1attairprobe matchprobes canineprobe R canineprobe matchprobes mmex10stv1mmensg utils hs133ahsrefseqcdf utils cfcanine2cfenseprobe R cfcanine2cfenseprobe matchprobes rnex10stv1rnugcdf utils mm74av2mmrefseq utils hs133ahsenstcdf utils mm430mmrefseq utils drzebrafishdrensg utils ggchickenggenstcdf utils mm74cv2mmenstcdf utils zebrafish R hsfocusptensgprobe R hsfocusptensgprobe matchprobes mgug4121a R BSgenome.Dmelanogaster.UCSC.dm2 R BSgenome.Dmelanogaster.UCSC.dm2 methods BSgenome.Dmelanogaster.UCSC.dm2 Biostrings BSgenome.Dmelanogaster.UCSC.dm2 BSgenome scehomology R hs133bhsenstprobe R hs133bhsenstprobe matchprobes mm11ksubammugprobe R mm11ksubammugprobe matchprobes ggchickenggenseprobe R ggchickenggenseprobe matchprobes mm430mmense utils mm74cv2mmenstprobe R mm74cv2mmenstprobe matchprobes dmdrosophila2dmenst utils tomatocdf utils mm74av1mmenst utils mgu74bv2probe R mgu74bv2probe matchprobes rn230arnenstcdf utils hgu133acdf utils BSgenome.Hsapiens.UCSC.hg16 R BSgenome.Hsapiens.UCSC.hg16 methods BSgenome.Hsapiens.UCSC.hg16 Biostrings BSgenome.Hsapiens.UCSC.hg16 BSgenome hs95av2hsenstprobe R hs95av2hsenstprobe matchprobes vvihomology R atgenomeattigrprobe R atgenomeattigrprobe matchprobes cfcanine2cfense utils rnex10stv1rnensgcdf utils mm74cv2mmentrezgcdf utils hs133ahsense utils rae230a R dmdrosophila2dmenstprobe R dmdrosophila2dmenstprobe matchprobes hsex10stv2hsenseprobe R hsex10stv2hsenseprobe matchprobes hsfocusptentrezgprobe R hsfocusptentrezgprobe matchprobes rnex10stv1rnentrezg utils BSgenome.Hsapiens.UCSC.hg17 R BSgenome.Hsapiens.UCSC.hg17 methods BSgenome.Hsapiens.UCSC.hg17 Biostrings BSgenome.Hsapiens.UCSC.hg17 BSgenome moe430bcdf utils rnex10stv1rnensgprobe R rnex10stv1rnensgprobe matchprobes mm430mmentrezgprobe R mm430mmentrezgprobe matchprobes ye6100subacdf utils mm430mmensg utils hs133xhsug utils mm11ksubammenseprobe R mm11ksubammenseprobe matchprobes chickencdf utils mm430bmmensgcdf utils hs133aptense utils rn230rnenstcdf utils rn230arnenstprobe R rn230arnenstprobe matchprobes rae230b R cfcanine2cfrefseq utils hs25kresogen R mm430bmmentrezg utils BSgenome.Scerevisiae.UCSC.sacCer1 R BSgenome.Scerevisiae.UCSC.sacCer1 methods BSgenome.Scerevisiae.UCSC.sacCer1 Biostrings BSgenome.Scerevisiae.UCSC.sacCer1 BSgenome cfcanine2cfugprobe R cfcanine2cfugprobe matchprobes BSgenome.Hsapiens.UCSC.hg18 R BSgenome.Hsapiens.UCSC.hg18 methods BSgenome.Hsapiens.UCSC.hg18 Biostrings BSgenome.Hsapiens.UCSC.hg18 BSgenome hs133phsug utils zebrafishcdf utils rat2302cdf utils moe430bprobe R moe430bprobe matchprobes rn230rnugcdf utils cfcanine2cfensg utils hgu95bprobe R hgu95bprobe matchprobes yeast2cdf utils hgu133plus2probe R hgu133plus2probe matchprobes hs133ahsensg utils mm74av1mmrefseqcdf utils mmex10stv1mmenstprobe R mmex10stv1mmenstprobe matchprobes celhomology R cfahomology R hsfocusptenstcdf utils klahomology R mm74bv2mmensecdf utils rn230brnug utils hs133xhsrefseqcdf utils hs133aptensg utils hgu133a2probe R hgu133a2probe matchprobes citrusprobe R citrusprobe matchprobes hs133ahsugprobe R hs133ahsugprobe matchprobes hsex10stv2ptensgprobe R hsex10stv2ptensgprobe matchprobes ggchickenggugprobe R ggchickenggugprobe matchprobes mm74cv2mmugprobe R mm74cv2mmugprobe matchprobes dmgenome1dmenst utils rn34arnentrezgprobe R rn34arnentrezgprobe matchprobes hgu95av2 R mm74av2mmenstprobe R mm74av2mmenstprobe matchprobes BSgenome.Celegans.UCSC.ce2 R BSgenome.Celegans.UCSC.ce2 methods BSgenome.Celegans.UCSC.ce2 Biostrings BSgenome.Celegans.UCSC.ce2 BSgenome mmex10stv1mmensecdf utils hs133bhsenseprobe R hs133bhsenseprobe matchprobes hsfocushsenstcdf utils mm74cv2mmentrezgprobe R mm74cv2mmentrezgprobe matchprobes mm11ksubbmmenstcdf utils mm74cv2mmenseprobe R mm74cv2mmenseprobe matchprobes hs133xhsense utils ratLLMappings R dmdrosophila2dmug utils hgug4101a R mm74bv2mmensgprobe R mm74bv2mmensgprobe matchprobes rgu34cprobe R rgu34cprobe matchprobes rn230arnugprobe R rn230arnugprobe matchprobes hs133xptense utils hsex10stv2hsenst utils hs95av2hsenseprobe R hs95av2hsenseprobe matchprobes mgu74bv2cdf utils rn34arnrefseqcdf utils hsex10stv2ptenst utils ygs98 R dmdrosophila2dmenseprobe R dmdrosophila2dmenseprobe matchprobes hthgu133acdf utils agprobe R agprobe matchprobes hsfocushsentrezgprobe R hsfocushsentrezgprobe matchprobes hs133xhsensg utils drzebrafishdrensgcdf utils dmgenome1dmensgcdf utils hu35ksubdprobe R hu35ksubdprobe matchprobes egohomology R hs133bptensgprobe R hs133bptensgprobe matchprobes rtu34 R rn230rnugprobe R rn230rnugprobe matchprobes maizeprobe R maizeprobe matchprobes rn230arnenseprobe R rn230arnenseprobe matchprobes drzebrafishdrentrezg utils hs133xptensg utils hs133pptenstcdf utils hgu133a2 R mm74av2mmenst utils vvgrapevvtigrprobe R vvgrapevvtigrprobe matchprobes hsex10stv2hsugcdf utils hs133bptenstcdf utils paeg1acdf utils mm11ksubammug utils mm430ammugcdf utils ggchickenggrefseq utils hs95av2ptensgprobe R hs95av2ptensgprobe matchprobes hs133av2hsrefseqcdf utils mmex10stv1mmenseprobe R mmex10stv1mmenseprobe matchprobes mm430ammensgprobe R mm430ammensgprobe matchprobes hs133ahsrefseqprobe R hs133ahsrefseqprobe matchprobes mgug4122a R hs133bhsense utils hs133phsenstcdf utils hs133bptentrezgcdf utils hgu133aprobe R hgu133aprobe matchprobes hs133bhsenstcdf utils dmdrosophila2dmrefseq utils hs133bptense utils mm74av2mmenseprobe R mm74av2mmenseprobe matchprobes mm11ksubammense utils hu35ksubbcdf utils mmex10stv1mmenst utils dmdrosophila2dmenstcdf utils hsfocushsugprobe R hsfocushsugprobe matchprobes atgenomeattigr utils hgu133atagcdf utils mm11ksubbmmugprobe R mm11ksubbmmugprobe matchprobes drzebrafishdrenst utils hgu133a2cdf utils drzebrafishdrenstprobe R drzebrafishdrenstprobe matchprobes hs133phsentrezgcdf utils hs95av2hsugcdf utils hs133bhsensg utils hs95av2hsentrezgcdf utils ye6100subccdf utils rn34arnrefseqprobe R rn34arnrefseqprobe matchprobes hsfocushsrefseqcdf utils hsex10stv2hsug utils rn230brnenstcdf utils hs133phsense utils hs133bptensg utils mm11ksubammensg utils mgrhomology R cinhomology R rn230rnrefseqcdf utils mu6500subacdf utils hs133pptense utils tomatoprobe R tomatoprobe matchprobes rgu34acdf utils mm430bmmrefseqcdf utils osriceosrefseqprobe R osriceosrefseqprobe matchprobes mi16cod R dmdrosophila2dmugcdf utils bovineprobe R bovineprobe matchprobes hgu95av2cdf utils m20kcod R mm74bv2mmensgcdf utils mm11ksubbmmugcdf utils gmahomology R mgu74bcdf utils mm74av1mmugcdf utils cfcanine2cfrefseqcdf utils ri16cod R hu6800subbcdf utils hs133phsensg utils rn34arnenstcdf utils mm74bv2mmentrezg utils mm74av1mmentrezgprobe R mm74av1mmentrezgprobe matchprobes mm430mmenst utils hsfocushsugcdf utils test3probe R test3probe matchprobes soybeanprobe R soybeanprobe matchprobes ratCHRLOC R mmex10stv1mmensgcdf utils humanLLMappings R hs133pptensg utils mm74av1mmenstcdf utils dmgenome1dmenstprobe R dmgenome1dmenstprobe matchprobes hgu95bcdf utils mgu74bprobe R mgu74bprobe matchprobes rat2302 R mmex10stv1mmentrezg utils hs133xhsugcdf utils hs133phsugprobe R hs133phsugprobe matchprobes ggchickenggrefseqcdf utils cfcanine2cfenst utils mm430ammrefseqprobe R mm430ammrefseqprobe matchprobes mm74av2mmug utils mm430mmensgprobe R mm430mmensgprobe matchprobes hs133phsugcdf utils hs133bhsugprobe R hs133bhsugprobe matchprobes hs133ahsenst utils rnex10stv1rnentrezgcdf utils hs133ahsug utils dmdrosophila2dmugprobe R dmdrosophila2dmugprobe matchprobes mm11ksubbmmrefseq utils hs133aptenst utils mgug4104a R hs133av2hsentrezgcdf utils test1cdf utils adme16cod R rn230arnugcdf utils maizecdf utils pfahomology R xlahomology R ggahomology R plasmodiumanophelesprobe R plasmodiumanophelesprobe matchprobes drzebrafishdrenseprobe R drzebrafishdrenseprobe matchprobes hs133ahsensgprobe R hs133ahsensgprobe matchprobes hsex10stv2hsrefseqcdf utils rn34arnrefseq utils mm74av1mmrefseq utils spohomology R gp53cdf utils mm11ksubammrefseqcdf utils ecoliasv2probe R ecoliasv2probe matchprobes rn230brnugprobe R rn230brnugprobe matchprobes mgu74av2 R hs133aptenstprobe R hs133aptenstprobe matchprobes atgenomeattairprobe R atgenomeattairprobe matchprobes hs133av2ptenstcdf utils mgu74cv2probe R mgu74cv2probe matchprobes hs95av2hsense utils ggchickenggug utils hgu95eprobe R hgu95eprobe matchprobes hs133pptentrezgprobe R hs133pptentrezgprobe matchprobes canine2probe R canine2probe matchprobes mm11ksubbmmense utils hsfocushsense utils mguatlas5k R hwgcod R mm11ksubbmmenstprobe R mm11ksubbmmenstprobe matchprobes rn230arnense utils hs95av2ptense utils ath1attigr utils yeast2probe R yeast2probe matchprobes mm430bmmrefseq utils hsfocusptense utils hs133av2hsenstcdf utils agcdf utils rn34arnugprobe R rn34arnugprobe matchprobes hs133xhsenst utils canine2 R hs95av2hsensg utils hu35ksubdcdf utils mm74av1mmugprobe R mm74av1mmugprobe matchprobes hu35ksuba R dmgenome1dmenseprobe R dmgenome1dmenseprobe matchprobes mm11ksubbmmensg utils humanCHRLOC R hs133xptenst utils hsfocushsensg utils cfcanine2cfrefseqprobe R cfcanine2cfrefseqprobe matchprobes hs133phsenstprobe R hs133phsenstprobe matchprobes hs133bhsrefseqcdf utils rn230arnensg utils hs95av2ptensg utils ncrhomology R mm430mmug utils btahomology R mm74cv2mmrefseqcdf utils ath1121501cdf utils hsfocusptensg utils ricecdf utils hu35ksubb R mm11ksubammensecdf utils wheatprobe R wheatprobe matchprobes hs133av2hsugcdf utils drosophila2cdf utils moe430aprobe R moe430aprobe matchprobes hs95av2ptenstcdf utils hs95av2hsrefseqcdf utils hgu95aprobe R hgu95aprobe matchprobes atgenomeattigrcdf utils barley1probe R barley1probe matchprobes hu35ksubc R mm74av1mmensgprobe R mm74av1mmensgprobe matchprobes mu6500subccdf utils hguDKFZ31 R dmdrosophila2dmrefseqcdf utils dmgenome1dmrefseqprobe R dmgenome1dmrefseqprobe matchprobes rgu34ccdf utils hgfocus R hs133xhsensgprobe R hs133xhsensgprobe matchprobes hsfocushsrefseq utils GO R hcg110probe R hcg110probe matchprobes hu35ksubd R hs95av2hsenstcdf utils mm430mmentrezgcdf utils hs133bhsrefseq utils hs133aptenseprobe R hs133aptenseprobe matchprobes rn230rnrefseqprobe R rn230rnrefseqprobe matchprobes hs133xptenstprobe R hs133xptenstprobe matchprobes BSgenome.Mmusculus.UCSC.mm7 R BSgenome.Mmusculus.UCSC.mm7 methods BSgenome.Mmusculus.UCSC.mm7 Biostrings BSgenome.Mmusculus.UCSC.mm7 BSgenome mu11ksubbprobe R mu11ksubbprobe matchprobes rn230arnrefseqcdf utils osriceosrefseq utils hu6800subdcdf utils mm74bv2mmug utils hcg110 R ecoliasv2cdf utils hs133bhsenst utils mm74av2mmentrezgprobe R mm74av2mmentrezgprobe matchprobes hivprtplus2cdf utils hs133phsentrezgprobe R hs133phsentrezgprobe matchprobes mm11ksubbmmenseprobe R mm11ksubbmmenseprobe matchprobes cfcanine2cfensecdf utils hs133xptentrezgprobe R hs133xptentrezgprobe matchprobes mm74av1mmentrezgcdf utils hs133aptensecdf utils hs133bptenst utils mu19ksubbcdf utils rn230brnenstprobe R rn230brnenstprobe matchprobes mm11ksubammenst utils hsex10stv2ptenstcdf utils hgu95dcdf utils mmex10stv1mmrefseqcdf utils mm74cv2mmrefseqprobe R mm74cv2mmrefseqprobe matchprobes rgu34bprobe R rgu34bprobe matchprobes hs133av2hsugprobe R hs133av2hsugprobe matchprobes drzebrafishdrug utils hs133pptentrezgcdf utils hs95av2ptentrezgcdf utils mm430mmugcdf utils mm430ammenstcdf utils rn34arnensgprobe R rn34arnensgprobe matchprobes mgu74av2cdf utils ath1121501probe R ath1121501probe matchprobes rn230rnug utils osriceostigr utils citruscdf utils mmuhomology R mm74av2mmrefseqcdf utils hs133av2hsense utils hs133ahsensecdf utils hs133phsenseprobe R hs133phsenseprobe matchprobes indac R hsex10stv2hsenstcdf utils ggchickenggensecdf utils mm74av2mmenstcdf utils mm74cv2mmensecdf utils test3cdf utils ath1atrefseq utils hs133av2ptense utils hs133phsenst utils mm74av2mmrefseqprobe R mm74av2mmrefseqprobe matchprobes mm430ammentrezgcdf utils hu35ksubcprobe R hu35ksubcprobe matchprobes rn230brnense utils hs133pptenst utils mm11ksubbmmug utils mm430bmmugcdf utils mm430mmenstcdf utils mm11ksubammrefseqprobe R mm11ksubammrefseqprobe matchprobes chickenprobe R chickenprobe matchprobes hgu95a R hs133av2hsensg utils rn230arnentrezgcdf utils atgenomeatrefseqprobe R atgenomeatrefseqprobe matchprobes poplarprobe R poplarprobe matchprobes rn230arnensecdf utils hs133av2hsensgprobe R hs133av2hsensgprobe matchprobes plasmodiumanophelescdf utils hs133xptenstcdf utils hs133av2ptensg utils bsubtilisprobe R bsubtilisprobe matchprobes rn230arnrefseqprobe R rn230arnrefseqprobe matchprobes hgu95b R hs95av2hsugprobe R hs95av2hsugprobe matchprobes hs133av2ptenstprobe R hs133av2ptenstprobe matchprobes mm74cv2mmense utils hs133pptensgprobe R hs133pptensgprobe matchprobes rn230brnensg utils hs133xptenseprobe R hs133xptenseprobe matchprobes rae230acdf utils rnohomology R mu11ksubbcdf utils hs133xhsentrezgcdf utils mouse430a2cdf utils hgfocusprobe R hgfocusprobe matchprobes hgu95c R hs133xhsenstcdf utils drosgenome1cdf utils hsex10stv2hsentrezgcdf utils rn230rnensecdf utils yeast2 R rn230brnrefseq utils cfcanine2cfentrezgprobe R cfcanine2cfentrezgprobe matchprobes mouse430a2 R hs133av2ptentrezgcdf utils hs133xhsentrezgprobe R hs133xhsentrezgprobe matchprobes rn230brnenseprobe R rn230brnenseprobe matchprobes hsfocushsensgprobe R hsfocushsensgprobe matchprobes taehomology R hgu95d R hs133av2hsrefseq utils mm74cv2mmensg utils mm430ammugprobe R mm430ammugprobe matchprobes mouseCHRLOC R ag R hsfocusptenstprobe R hsfocusptenstprobe matchprobes mm11ksubammensgcdf utils hsfocusptensecdf utils hsex10stv2hsrefseq utils rn230rnensgprobe R rn230rnensgprobe matchprobes hgu95e R hs133xhsrefseq utils mm430bmmensgprobe R mm430bmmensgprobe matchprobes mm11ksubammentrezg utils hsex10stv2hsugprobe R hsex10stv2hsugprobe matchprobes mgu74cv2 R ath1atrefseqprobe R ath1atrefseqprobe matchprobes mm74av2mmugprobe R mm74av2mmugprobe matchprobes mm74av2mmugcdf utils rnu34cdf utils mm74cv2mmug utils osriceostigrcdf utils mm11ksubammentrezgprobe R mm11ksubammentrezgprobe matchprobes mmex10stv1mmug utils hs95av2ptentrezgprobe R hs95av2ptentrezgprobe matchprobes drzebrafishdrrefseqcdf utils drehomology R m10kcod R cfcanine2cfensgprobe R cfcanine2cfensgprobe matchprobes hs95av2hsenst utils hsfocushsensecdf utils ath1attaircdf utils mm430mmugprobe R mm430mmugprobe matchprobes mm11ksubbmmenst utils moe430acdf utils hsfocushsenst utils mm11ksubbmmensecdf utils rn230arnenst utils hs95av2ptenst utils r10kcod R hsfocusptenst utils xenopuslaevis R mm430ammug utils mgu74aprobe R mgu74aprobe matchprobes moe430a R rnex10stv1rnenstprobe R rnex10stv1rnenstprobe matchprobes ggchickenggensgprobe R ggchickenggensgprobe matchprobes hs133bhsug utils mm11ksubammentrezgcdf utils cfcanine2cfensgcdf utils YEAST R hs133av2ptenseprobe R hs133av2ptenseprobe matchprobes hs133aptensgcdf utils cfcanine2cfentrezg utils rn230brnugcdf utils hs133aptentrezg utils moe430b R mm11ksubammrefseq utils rae230bprobe R rae230bprobe matchprobes mouse430a2probe R mouse430a2probe matchprobes hs133xhsugprobe R hs133xhsugprobe matchprobes mm74cv2mmrefseq utils hgu133atagprobe R hgu133atagprobe matchprobes rwgcod R hs133pptensecdf utils hsex10stv2hsensgprobe R hsex10stv2hsensgprobe matchprobes rn34arnense utils hs133ahsensgcdf utils dmgenome1dmrefseqcdf utils rnex10stv1rnenstcdf utils ggchickenggensgcdf utils mm74cv2mmensgcdf utils hs133bptensecdf utils rnex10stv1rnug utils drzebrafishdrrefseqprobe R drzebrafishdrrefseqprobe matchprobes mm11ksubammensgprobe R mm11ksubammensgprobe matchprobes hs133ahsentrezg utils u133x3p R hs133phsrefseq utils riceprobe R riceprobe matchprobes mm74cv2mmentrezg utils hsex10stv2ptenstprobe R hsex10stv2ptenstprobe matchprobes hsfocusptenseprobe R hsfocusptenseprobe matchprobes mm430bmmenstcdf utils barley1cdf utils hs133phsensecdf utils hgubeta7 R hgu95dprobe R hgu95dprobe matchprobes celeganscdf utils hs133bhsensecdf utils drosophila2 R rn34arnensg utils mm430ammense utils mm430ammrefseq utils rn230arnensgcdf utils hs95av2hsentrezgprobe R hs95av2hsentrezgprobe matchprobes dmdrosophila2dmensecdf utils rn230arnentrezg utils mm74bv2mmenstprobe R mm74bv2mmenstprobe matchprobes ecoli2probe R ecoli2probe matchprobes cfcanine2cfugcdf utils hs133ahsentrezgcdf utils hs133bhsensgprobe R hs133bhsensgprobe matchprobes rn230brnensecdf utils rn230rnensgcdf utils hgug4110b R rnex10stv1rnenseprobe R rnex10stv1rnenseprobe matchprobes mm430ammensg utils mm74cv2mmensgprobe R mm74cv2mmensgprobe matchprobes mm11ksubbmmrefseqcdf utils PFAM R PFAM RSQLite rn230rnentrezg utils hs133bptenstprobe R hs133bptenstprobe matchprobes hgu133plus2 R hs133av2hsenst utils drosophila2probe R drosophila2probe matchprobes u133x3pcdf utils hs95av2hsensgprobe R hs95av2hsensgprobe matchprobes hs133av2ptenst utils sugarcanecdf utils medicagocdf utils rtu34cdf utils hsfocusptensgcdf utils dmdrosophila2dmensgprobe R dmdrosophila2dmensgprobe matchprobes rn230brnenst utils rnex10stv1rnrefseqprobe R rnex10stv1rnrefseqprobe matchprobes hs95av2ptenstprobe R hs95av2ptenstprobe matchprobes hsfocusptentrezg utils rnex10stv1rnugprobe R rnex10stv1rnugprobe matchprobes mm430ammenstprobe R mm430ammenstprobe matchprobes hgu133bcdf utils rn34arnensecdf utils hu35ksubacdf utils hs133phsrefseqcdf utils ggchickenggense utils xenopuslaevisprobe R xenopuslaevisprobe matchprobes hcg110cdf utils hs133ahsrefseq utils mm11ksubbmmentrezgprobe R mm11ksubbmmentrezgprobe matchprobes hsex10stv2ptenseprobe R hsex10stv2ptenseprobe matchprobes mm74av1mmensecdf utils rn230arnensgprobe R rn230arnensgprobe matchprobes rn230rnrefseq utils hs133ahsugcdf utils hsfocushsentrezgcdf utils mu11ksubaprobe R mu11ksubaprobe matchprobes drzebrafishdrenstcdf utils dmgenome1dmenstcdf utils mm430bmmugprobe R mm430bmmugprobe matchprobes hsfocushsensgcdf utils mm11ksubbmmensgcdf utils ye6100subbcdf utils mmex10stv1mmentrezgcdf utils hsfocushsentrezg utils canine2cdf utils hs133xptentrezgcdf utils hs133bhsrefseqprobe R hs133bhsrefseqprobe matchprobes mm74cv2mmenst utils mm11ksubbmmentrezg utils ecolicdf utils mm74bv2mmugcdf utils hsex10stv2ptentrezgcdf utils rnex10stv1rnense utils rnu34 R vvgrapevvtigrcdf utils mmex10stv1mmensgprobe R mmex10stv1mmensgprobe matchprobes ggchickenggensg utils rnex10stv1rnentrezgprobe R rnex10stv1rnentrezgprobe matchprobes hsfocushsug utils rn230rnense utils mm74bv2mmenseprobe R mm74bv2mmenseprobe matchprobes rgu34aprobe R rgu34aprobe matchprobes hi16cod R vvgrapevvtigr utils mm74av2mmensgprobe R mm74av2mmensgprobe matchprobes rhesuscdf utils zebrafishprobe R zebrafishprobe matchprobes hsfocushsrefseqprobe R hsfocushsrefseqprobe matchprobes h20kcod R mgu74acdf utils hu6800subacdf utils rnex10stv1rnensg utils hs133pptensgcdf utils hs133av2ptensecdf utils hu35ksubbprobe R hu35ksubbprobe matchprobes rnu34probe R rnu34probe matchprobes xenopuslaeviscdf utils hs133bptenseprobe R hs133bptenseprobe matchprobes ptrhomology R rn230rnensg utils rn34arnug utils rn230brnrefseqcdf utils dmgenome1dmrefseq utils hs133bptensgcdf utils hs133pptentrezg utils mm430bmmense utils hgu95acdf utils ath1atrefseqcdf utils hs133av2ptentrezgprobe R hs133av2ptentrezgprobe matchprobes hs133bptentrezg utils hs133xhsrefseqprobe R hs133xhsrefseqprobe matchprobes hs133phsensgcdf utils hs133av2hsensecdf utils hs95av2ptenseprobe R hs95av2ptenseprobe matchprobes mouse4302 R rn230arnentrezgprobe R rn230arnentrezgprobe matchprobes mm430ammentrezgprobe R mm430ammentrezgprobe matchprobes mm430ammenseprobe R mm430ammenseprobe matchprobes hs133aptentrezgprobe R hs133aptentrezgprobe matchprobes hs133bhsensgcdf utils hs133phsentrezg utils mm74bv2mmense utils rat2302probe R rat2302probe matchprobes hguatlas13k R mouse4302probe R mouse4302probe matchprobes hs133bhsentrezg utils mm430mmenstprobe R mm430mmenstprobe matchprobes atgenomeattair utils mm430bmmensg utils hsahomology R drzebrafishdrugprobe R drzebrafishdrugprobe matchprobes cMAP R ecoli2cdf utils dmgenome1dmugprobe R dmgenome1dmugprobe matchprobes dmdrosophila2dmensgcdf utils celegans R rguatlas4k R bsubtiliscdf utils mm74bv2mmenstcdf utils rn230arnrefseq utils hs133av2hsrefseqprobe R hs133av2hsrefseqprobe matchprobes xtrhomology R atgenomeatrefseq utils hgug4111a R mm430bmmrefseqprobe R mm430bmmrefseqprobe matchprobes hs95av2ptensecdf utils ygs98cdf utils hs133ahsenstprobe R hs133ahsenstprobe matchprobes mm74bv2mmensg utils rn230brnensgcdf utils hgu133plus2cdf utils mmex10stv1mmenstcdf utils mmex10stv1mmrefseqprobe R mmex10stv1mmrefseqprobe matchprobes ygs98probe R ygs98probe matchprobes rn230brnentrezg utils hsex10stv2hsrefseqprobe R hsex10stv2hsrefseqprobe matchprobes rn34arnenst utils agahomology R hs95av2hsensecdf utils mm430mmrefseqprobe R mm430mmrefseqprobe matchprobes mm74bv2mmentrezgprobe R mm74bv2mmentrezgprobe matchprobes drosgenome1 R drzebrafishdrensgprobe R drzebrafishdrensgprobe matchprobes cfcanine2cfug utils rn34arnensgcdf utils hu35ksubccdf utils mu19ksuba R mm430bmmug utils rn34arnentrezg utils mm74av1mmensgcdf utils hs133av2hsentrezgprobe R hs133av2hsentrezgprobe matchprobes mm430ammenst utils u133aaofav2cdf utils hsex10stv2ptensecdf utils ggchickenggugcdf utils mm74av1mmentrezg utils mu19ksubb R drzebrafishdrrefseq utils ecoliprobe R ecoliprobe matchprobes athhomology R ye6100subdcdf utils hs95av2hsug utils porcineprobe R porcineprobe matchprobes mm430ammensecdf utils hs133aptentrezgcdf utils mgu74a R mm74bv2mmrefseq utils hs133ahsentrezgprobe R hs133ahsentrezgprobe matchprobes mu19ksubc R mm430mmenseprobe R mm430mmenseprobe matchprobes ath1attigrprobe R ath1attigrprobe matchprobes rn230rnentrezgcdf utils hsex10stv2hsensecdf utils mu6500subbcdf utils mm74av2mmensecdf utils mm74av2mmentrezgcdf utils mgu74b R rgu34bcdf utils rae230aprobe R rae230aprobe matchprobes sugarcaneprobe R sugarcaneprobe matchprobes mm74bv2mmugprobe R mm74bv2mmugprobe matchprobes saureuscdf utils mgu74av2probe R mgu74av2probe matchprobes htratfocuscdf utils mm74av1mmenstprobe R mm74av1mmenstprobe matchprobes mm430mmensecdf utils dmgenome1dmensgprobe R dmgenome1dmensgprobe matchprobes drzebrafishdrentrezgcdf utils mgu74c R mgu74ccdf utils mm74cv2mmugcdf utils hu6800subccdf utils hs133ahsenseprobe R hs133ahsenseprobe matchprobes hs133xhsenstprobe R hs133xhsenstprobe matchprobes mmex10stv1mmugprobe R mmex10stv1mmugprobe matchprobes rnex10stv1rnrefseqcdf utils mouse4302cdf utils hs133av2ptensgcdf utils paeg1aprobe R paeg1aprobe matchprobes hs133xptensecdf utils mu19ksubacdf utils hs133av2ptentrezg utils hgu95ccdf utils mm430bmmentrezgcdf utils hvuhomology R hsfocusptentrezgcdf utils ath1attair utils ggchickenggenst utils wheatcdf utils celegansprobe R celegansprobe matchprobes hgu95cprobe R hgu95cprobe matchprobes vitisviniferaprobe R vitisviniferaprobe matchprobes hgu95av2probe R hgu95av2probe matchprobes drosgenome1probe R drosgenome1probe matchprobes hs133av2hsensgcdf utils rn230brnentrezgprobe R rn230brnentrezgprobe matchprobes mm430bmmentrezgprobe R mm430bmmentrezgprobe matchprobes hs133bptentrezgprobe R hs133bptentrezgprobe matchprobes rn230brnentrezgcdf utils hs133xhsensecdf utils hu6800 R hgu133a R hs133av2hsentrezg utils osriceosrefseqcdf utils hgfocuscdf utils test2cdf utils hs133aptensgprobe R hs133aptensgprobe matchprobes mmex10stv1mmugcdf utils rn34arnenstprobe R rn34arnenstprobe matchprobes rnex10stv1rnenst utils dmdrosophila2dmense utils mm74av1mmense utils mouseLLMappings R rn230arnug utils rn230rnenst utils hgu133b R KEGG R mm11ksubbmmensgprobe R mm11ksubbmmensgprobe matchprobes mu11ksuba R drzebrafishdrentrezgprobe R drzebrafishdrentrezgprobe matchprobes sschomology R rn34arnentrezgcdf utils hs95av2ptensgcdf utils hsex10stv2ptentrezgprobe R hsex10stv2ptentrezgprobe matchprobes hs133av2hsug utils mm74bv2mmrefseqcdf utils hs95av2ptentrezg utils hgug4112a R mu11ksubb R dmgenome1dmug utils mgu74cv2cdf utils rn34arnugcdf utils dmdrosophila2dmensg utils mm74av1mmensg utils mm74av1mmenseprobe R mm74av1mmenseprobe matchprobes omyhomology R hs133bhsugcdf utils mm430bmmenst utils hs133av2hsenstprobe R hs133av2hsenstprobe matchprobes hs133phsensgprobe R hs133phsensgprobe matchprobes hs95av2hsensgcdf utils mu11ksubacdf utils hs133xhsenseprobe R hs133xhsenseprobe matchprobes ggchickenggrefseqprobe R ggchickenggrefseqprobe matchprobes porcinecdf utils mgug4120a R mgu74bv2 R u133x3pprobe R u133x3pprobe matchprobes mm11ksubbmmrefseqprobe R mm11ksubbmmrefseqprobe matchprobes hs95av2hsentrezg utils hu6800probe R hu6800probe matchprobes hs133pptenstprobe R hs133pptenstprobe matchprobes mm74bv2mmrefseqprobe R mm74bv2mmrefseqprobe matchprobes ath1attigrcdf utils mm74bv2mmenst utils vitisviniferacdf utils hsex10stv2ptensgcdf utils LogitBoost NONE codetools R RGtk R XML R XML methods SJava R RMySQL R RMySQL methods RMySQL DBI SSOAP R SSOAP methods SSOAP XML SSOAP RCurl RCurl methods