Talk:Test graph - BioConductor package dependancies

From FollowTheScore
Revision as of 11:56, 26 September 2007 by Dmb (talk | contribs) (New page: <pre> gpls NONE sigPathway R TypeInfo methods Biostrings R Biostrings methods Mfuzz R Mfuzz Biobase Mfuzz e1071 LMGene R LMGene Biobase LMGene multtest LMGene survival ecolitk R ecolitk af...)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
gpls	NONE
sigPathway	R
TypeInfo	methods
Biostrings	R
Biostrings	methods
Mfuzz	R
Mfuzz	Biobase
Mfuzz	e1071
LMGene	R
LMGene	Biobase
LMGene	multtest
LMGene	survival
ecolitk	R
ecolitk	affy
ecolitk	ecoliLeucine
ecolitk	ecolicdf
ecolitk	Biobase
maCorrPlot	NONE
OLINgui	R
OLINgui	OLIN
xcms	R
xcms	methods
rflowcyt	R
rflowcyt	survival
rflowcyt	xtable
rflowcyt	stats
rflowcyt	KernSmooth
rflowcyt	MASS
rflowcyt	grid
rflowcyt	methods
rflowcyt	hexbin
rflowcyt	rfcdmin
rflowcyt	fields
rflowcyt	lattice
rflowcyt	locfit
daMA	MASS
made4	ade4
made4	scatterplot3d
biomaRt	methods
biomaRt	XML
biomaRt	RCurl
gaggle	R
gaggle	rJava
gaggle	graph
affylmGUI	limma
affylmGUI	tcltk
affylmGUI	affy
affylmGUI	Biobase
SAGElyzer	R
SAGElyzer	AnnBuilder
SAGElyzer	tkWidgets
SAGElyzer	genefilter
SAGElyzer	annotate
GeneR	NONE
GeneSpring	R
GeneSpring	Biobase
GeneSpring	methods
geneplotter	R
geneplotter	annotate
geneplotter	Biobase
geneplotter	methods
Rdbi	R
BioMVCClass	R
BioMVCClass	methods
BioMVCClass	MVCClass
BioMVCClass	Biobase
BioMVCClass	graph
BioMVCClass	Rgraphviz
sizepower	stats
PROcess	Icens
snapCGH	limma
snapCGH	tilingArray
snapCGH	DNAcopy
snapCGH	aCGH
snapCGH	GLAD
snapCGH	cluster
snapCGH	methods
bioDist	R
bioDist	methods
bioDist	Biobase
marray	R
marray	limma
marray	methods
tkWidgets	R
tkWidgets	methods
tkWidgets	widgetTools
tkWidgets	DynDoc
rama	NONE
Ruuid	R
Ruuid	methods
arrayQuality	R
arrayQuality	marray
arrayQuality	limma
arrayQuality	convert
arrayQuality	hexbin
arrayQuality	gridBase
arrayQuality	RColorBrewer
GraphAT	MCMCpack
GraphAT	graph
beadarray	limma
beadarray	Biobase
beadarray	affy
beadarray	methods
ppiStats	apComplex
ppiStats	GO
ppiStats	GOstats
ppiStats	YEAST
ppiStats	graph
ppiStats	Rgraphviz
ppiStats	Category
pcaMethods	R
pcaMethods	MASS
pcaMethods	ellipse
pcaMethods	pls
pcaMethods	methods
RankProd	R
GlobalAncova	methods
webbioc	R
webbioc	Biobase
webbioc	affy
webbioc	multtest
webbioc	annaffy
webbioc	vsn
webbioc	gcrma
webbioc	qvalue
cghMCR	methods
cghMCR	DNAcopy
cghMCR	marray
cghMCR	arrayQuality
widgetInvoke	methods
widgetInvoke	XML
widgetInvoke	RGtk
hexbin	R
hexbin	methods
hexbin	grid
hexbin	lattice
hexbin	colorspace
matchprobes	R
matchprobes	Biobase
matchprobes	affy
siggenes	methods
siggenes	multtest
siggenes	Biobase
AnnBuilder	R
AnnBuilder	methods
AnnBuilder	Biobase
AnnBuilder	XML
AnnBuilder	annotate
AnnBuilder	utils
AnnBuilder	RSQLite
pamr	NONE
RBGL	graph
RBGL	methods
biocViews	R
biocViews	methods
biocViews	tools
biocViews	graph
biocViews	RBGL
biocViews	XML
CoCiteStats	R
CoCiteStats	humanLLMappings
ChromoViz	RSvgDevice
ChromoViz	XML
GOstats	graph
GOstats	GO
GOstats	annotate
GOstats	RBGL
GOstats	Biobase
GOstats	Category
GOstats	methods
prada	R
prada	Biobase
prada	RColorBrewer
prada	grid
prada	methods
prada	geneplotter
bridge	R
bridge	rama
affxparser	R
ontoTools	R
ontoTools	methods
ontoTools	graph
ontoTools	SparseM
ontoTools	GO
ontoTools	Biobase
ontoTools	annotate
MCRestimate	R
MCRestimate	e1071
MCRestimate	pamr
MCRestimate	randomForest
MCRestimate	RColorBrewer
MCRestimate	Biobase
MCRestimate	golubEsets
aroma.light	R.oo
pkgDepTools	methods
pkgDepTools	graph
pkgDepTools	RBGL
MeasurementError.cor	NONE
lapmix	R
logicFS	LogicReg
impute	R
copa	Biobase
copa	methods
Category	Biobase
Category	KEGG
Category	GO
Category	graph
Category	annotate
Category	methods
Category	genefilter
Harshlight	R
Harshlight	affy
OrderedList	R
OrderedList	Biobase
OrderedList	twilight
MVCClass	R
MVCClass	methods
panp	affy
LPE	NONE
MANOR	R
MANOR	GLAD
RbcBook1	Biobase
vsn	R
vsn	Biobase
iSPlot	R
iSPlot	methods
iSPlot	RGtk
iSPlot	gtkDevice
iSPlot	MVCClass
pickgene	MASS
makecdfenv	R
makecdfenv	methods
makecdfenv	Biobase
makecdfenv	affy
makecdfenv	utils
makecdfenv	affyio
aCGH	R
aCGH	cluster
aCGH	survival
aCGH	multtest
aCGH	sma
KEGGSOAP	methods
KEGGSOAP	XML
KEGGSOAP	SSOAP
KEGGSOAP	RCurl
annotate	R
annotate	methods
annotate	Biobase
limma	R
limma	methods
timecourse	R
timecourse	limma
timecourse	MASS
timecourse	Biobase
timecourse	methods
qvalue	R
nem	R
nem	e1071
nem	graph
nem	Rgraphviz
nem	RBGL
HEM	R
HEM	Biobase
SBMLR	XML
SBMLR	odesolve
MLInterfaces	R
MLInterfaces	Biobase
MLInterfaces	methods
MLInterfaces	genefilter
weaver	R
weaver	digest
weaver	tools
weaver	utils
weaver	codetools
goTools	Biobase
goTools	annotate
goTools	GO
applera	R
applera	Biobase
applera	methods
applera	affy
applera	genefilter
applera	limma
applera	geneplotter
applera	RColorBrewer
applera	prada
applera	combinat
annaffy	R
annaffy	methods
annaffy	Biobase
annaffy	GO
annaffy	KEGG
spotSegmentation	R
spotSegmentation	mclust
geneRecommender	R
geneRecommender	Biobase
codelink	R
codelink	methods
codelink	limma
codelink	annotate
widgetTools	R
widgetTools	methods
widgetTools	utils
splots	R
splots	grid
RSNPper	methods
RSNPper	utils
RSNPper	tools
RSNPper	XML
GeneMeta	R
GeneMeta	methods
GeneMeta	Biobase
GeneMeta	genefilter
GEOquery	methods
globaltest	R
globaltest	methods
globaltest	graphics
globaltest	multtest
pathRender	graph
pathRender	Rgraphviz
pathRender	cMAP
convert	R
convert	Biobase
convert	limma
convert	marray
convert	utils
convert	methods
MantelCorr	R
stam	R
stam	GO
stam	Biobase
stam	pamr
stam	cluster
stam	annaffy
stam	methods
BSgenome	R
BSgenome	methods
BSgenome	Biostrings
pdmclass	Biobase
pdmclass	R
pdmclass	fibroEset
pdmclass	mda
cellHTS	R
cellHTS	prada
cellHTS	RColorBrewer
cellHTS	Biobase
cellHTS	genefilter
metaArray	MergeMaid
EBImage	R
EBImage	methods
arrayQCplot	RGtk2
arrayQCplot	cairoDevice
arrayQCplot	LPE
hopach	R
hopach	cluster
hopach	Biobase
DNAcopy	NONE
ssize	gdata
ssize	xtable
apComplex	graph
tilingArray	R
tilingArray	methods
tilingArray	Biobase
tilingArray	affy
tilingArray	RColorBrewer
tilingArray	grid
tilingArray	strucchange
tilingArray	vsn
tilingArray	genefilter
tilingArray	geneplotter
tilingArray	pixmap
RMAPPER	methods
splicegear	R
splicegear	methods
splicegear	utils
splicegear	grid
splicegear	Biobase
splicegear	XML
splicegear	annotate
gff3Plotter	R
gff3Plotter	methods
mmgmos	R
mmgmos	methods
mmgmos	Biobase
mmgmos	affy
plgem	R
plgem	Biobase
plgem	MASS
DEDS	R
DEDS	methods
pgUtils	R
pgUtils	Rdbi
pgUtils	RdbiPgSQL
pgUtils	methods
hypergraph	R
hypergraph	methods
hypergraph	graph
arrayMagic	R
arrayMagic	methods
arrayMagic	utils
arrayMagic	Biobase
arrayMagic	vsn
arrayMagic	limma
arrayMagic	genefilter
nudge	stats
sscore	R
sscore	affy
sscore	affxparser
simulatorAPMS	graph
simulatorAPMS	apComplex
simulatorAPMS	Rgraphviz
simulatorAPMS	ScISI
simulatorAPMS	ppiStats
affy	R
affy	Biobase
affy	methods
affy	utils
affy	affyio
OCplus	R
OCplus	akima
OCplus	multtest
diffGeneAnalysis	minpack.lm
macat	Biobase
macat	annotate
idiogram	R
idiogram	methods
idiogram	Biobase
idiogram	annotate
pcot2	R
pcot2	grDevices
pcot2	Biobase
pcot2	amap
iSNetwork	R
iSNetwork	methods
iSNetwork	graph
iSNetwork	Rgraphviz
iSNetwork	RGtk
iSNetwork	gtkDevice
iSNetwork	BioMVCClass
iSNetwork	MVCClass
iSNetwork	Biobase
iSNetwork	annotate
affyPLM	R
affyPLM	affy
affyPLM	affydata
affyPLM	Biobase
affyPLM	methods
affyPLM	gcrma
spikeLI	utils
genefilter	R
genefilter	methods
genefilter	Biobase
genefilter	survival
altcdfenvs	R
altcdfenvs	methods
altcdfenvs	Biobase
altcdfenvs	affy
altcdfenvs	matchprobes
altcdfenvs	makecdfenv
OLIN	R
OLIN	methods
OLIN	stats
OLIN	locfit
OLIN	Biobase
OLIN	marray
beadarraySNP	methods
beadarraySNP	Biobase
beadarraySNP	limma
beadarraySNP	quantsmooth
Heatplus	NONE
GeneTS	R
GeneTS	GeneCycle
GeneTS	GeneNet
safe	R
safe	methods
safe	Biobase
Rgraphviz	R
Rgraphviz	methods
Rgraphviz	graph
Rgraphviz	geneplotter
RdbiPgSQL	R
RdbiPgSQL	Rdbi
twilight	R
twilight	splines
twilight	stats
GeneTraffic	R
GeneTraffic	Biobase
GeneTraffic	affy
GeneTraffic	marray
GeneTraffic	SSOAP
GeneTraffic	XML
GeneTraffic	digest
GeneTraffic	methods
simpleaffy	R
simpleaffy	affy
simpleaffy	genefilter
maSigPro	R
maSigPro	Biobase
Icens	survival
Rredland	methods
Rredland	graph
graph	R
graph	methods
nnNorm	R
nnNorm	nnet
nnNorm	marray
genArise	R
genArise	locfit
genArise	tkrplot
genArise	xtable
genArise	methods
EBarrays	R
EBarrays	Biobase
EBarrays	methods
EBarrays	utils
EBarrays	lattice
reb	R
reb	Biobase
reb	idiogram
SAGx	R
SAGx	stats
SAGx	multtest
SAGx	sma
SAGx	methods
maanova	R
RMAGEML	marray
RMAGEML	limma
RMAGEML	Biobase
affyio	methods
edd	methods
edd	golubEsets
edd	Biobase
edd	class
edd	nnet
edd	xtable
maDB	R
maDB	Biobase
maDB	affy
maDB	limma
maDB	methods
DynDoc	methods
DynDoc	tools
BeadExplorer	R
BeadExplorer	methods
BeadExplorer	widgetTools
BeadExplorer	affy
BeadExplorer	R2HTML
BeadExplorer	grDevices
BeadExplorer	tkWidgets
affycoretools	affy
affycoretools	limma
affycoretools	GOstats
affycoretools	biomaRt
limmaGUI	limma
limmaGUI	tcltk
ABarray	Biobase
ABarray	multtest
GGtools	R
GGtools	methods
GGtools	Biobase
GGtools	hgfocus
GGtools	geneplotter
Biobase	R
Biobase	tools
Biobase	methods
Biobase	utils
factDesign	Biobase
factDesign	affy
factDesign	stats
sagenhaft	R
sagenhaft	SparseM
ROC	R
ROC	utils
ROC	methods
bim	stats
bim	qtl
gcrma	R
gcrma	Biobase
gcrma	affy
gcrma	matchprobes
gcrma	splines
adSplit	R
adSplit	methods
adSplit	stats
adSplit	cluster
adSplit	multtest
adSplit	Biobase
adSplit	affy
adSplit	GO
adSplit	KEGG
Resourcerer	R
Resourcerer	AnnBuilder
GLAD	R
MergeMaid	R
MergeMaid	survival
MergeMaid	Biobase
MergeMaid	MASS
MergeMaid	methods
plier	R
plier	affy
quantsmooth	quantreg
quantsmooth	lodplot
affycomp	R
affycomp	Biobase
stepNorm	R
stepNorm	marray
stepNorm	MASS
stepNorm	methods
clusterStab	Biobase
clusterStab	R
clusterStab	methods
affyQCReport	R
affyQCReport	Biobase
affyQCReport	affy
affyQCReport	simpleaffy
affypdnn	R
affypdnn	affy
affypdnn	affydata
affypdnn	hgu95av2probe
affydata	R
affydata	affy
pairseqsim	methods
pairseqsim	stats
fdrame	NONE
ScISI	methods
ScISI	apComplex
ScISI	GO
ScISI	GOstats
ScISI	graph
ScISI	RBGL
ScISI	Rgraphviz
ScISI	YEAST
ScISI	xtable
multtest	R
multtest	methods
multtest	Biobase
multtest	survival
ctc	NONE
yeastExpData	R
yeastExpData	graph
golubEsets	Biobase
estrogen	R
estrogen	affy
MAQCsubset	Biobase
fibroEset	Biobase
HEEBOdata	NONE
facsDorit	R
facsDorit	prada
Iyer517	Biobase
stjudem	R
stjudem	utils
ProData	R
ProData	Biobase
SpikeIn	R
SpikeIn	affy
ALL	Biobase
faahKO	R
AmpAffyExample	R
AmpAffyExample	affy
rfcdmin	R
hgu2beta7	R
kidpack	R
kidpack	Biobase
CLL	R
CLL	affy
CLL	Biobase
SpikeInSubset	R
SpikeInSubset	Biobase
SpikeInSubset	affy
gaschYHS	Biobase
ALLMLL	R
ALLMLL	affy
bronchialIL13	affy
beta7	R
beta7	marray
lungExpression	R
lungExpression	Biobase
HIVcDNAvantWout03	NONE
yeastCC	Biobase
harbChIP	Biobase
ppiData	Rgraphviz
ppiData	graph
lymphoma	R
colonCA	Biobase
SNAData	R
SNAData	graph
ecoliLeucine	R
ecoliLeucine	affy
davidTiling	R
davidTiling	Biobase
davidTiling	tilingArray
davidTiling	GO
MEEBOdata	NONE
GGdata	R
GGdata	Biobase
GGdata	hgfocus
rn230rnentrezgprobe	R
rn230rnentrezgprobe	matchprobes
rn230brnrefseqprobe	R
rn230brnrefseqprobe	matchprobes
dmgenome1dmense	utils
medicagoprobe	R
medicagoprobe	matchprobes
dmgenome1dmugcdf	utils
hsex10stv2ptentrezg	utils
caninecdf	utils
mm430ammensgcdf	utils
mm430ammrefseqcdf	utils
hsfocushsenstprobe	R
hsfocushsenstprobe	matchprobes
ath1121501	R
hs133bhsentrezgprobe	R
hs133bhsentrezgprobe	matchprobes
drzebrafishdrugcdf	utils
mm430ammentrezg	utils
hgu133bprobe	R
hgu133bprobe	matchprobes
mmex10stv1mmentrezgprobe	R
mmex10stv1mmentrezgprobe	matchprobes
rn34arnenseprobe	R
rn34arnenseprobe	matchprobes
soybeancdf	utils
hs133xptensgprobe	R
hs133xptensgprobe	matchprobes
rgug4105a	R
rtu34probe	R
rtu34probe	matchprobes
hsex10stv2hsensgcdf	utils
rnex10stv1rnensecdf	utils
mm11ksubbmmentrezgcdf	utils
mu6500subdcdf	utils
mm74av2mmensgcdf	utils
mm74bv2mmentrezgcdf	utils
rn230rnenstprobe	R
rn230rnenstprobe	matchprobes
h10kcod	R
hs95av2hsrefseq	utils
hsex10stv2hsentrezg	utils
mm430bmmenstprobe	R
mm430bmmenstprobe	matchprobes
hsex10stv2hsense	utils
mm74av2mmentrezg	utils
BSgenome.Dmelanogaster.BDGP.Release5	R
BSgenome.Dmelanogaster.BDGP.Release5	methods
BSgenome.Dmelanogaster.BDGP.Release5	Biostrings
BSgenome.Dmelanogaster.BDGP.Release5	BSgenome
dmgenome1dmensg	utils
rgu34a	R
mm430bmmensecdf	utils
dmehomology	R
mm430mmensgcdf	utils
hu35ksubaprobe	R
hu35ksubaprobe	matchprobes
rn230brnensgprobe	R
rn230brnensgprobe	matchprobes
hsex10stv2ptense	utils
osriceostigrprobe	R
osriceostigrprobe	matchprobes
hsex10stv2hsentrezgprobe	R
hsex10stv2hsentrezgprobe	matchprobes
cfcanine2cfenstprobe	R
cfcanine2cfenstprobe	matchprobes
mm430mmentrezg	utils
mm74av1mmrefseqprobe	R
mm74av1mmrefseqprobe	matchprobes
rnex10stv1rnrefseq	utils
atgenomeattaircdf	utils
zmahomology	R
rgu34b	R
hs133xptensgcdf	utils
mu19ksubccdf	utils
hgu95ecdf	utils
atgenomeatrefseqcdf	utils
hs133phsrefseqprobe	R
hs133phsrefseqprobe	matchprobes
hsex10stv2hsensg	utils
hs133xptentrezg	utils
saureusprobe	R
saureusprobe	matchprobes
hs133av2hsenseprobe	R
hs133av2hsenseprobe	matchprobes
rhesusprobe	R
rhesusprobe	matchprobes
mm74av2mmense	utils
mm11ksubammenstcdf	utils
hguqiagenv3	R
rgu34c	R
mmex10stv1mmrefseq	utils
cfcanine2cfentrezgcdf	utils
ggchickenggenstprobe	R
ggchickenggenstprobe	matchprobes
cyp450cdf	utils
hsex10stv2ptensg	utils
hs133pptenseprobe	R
hs133pptenseprobe	matchprobes
hs133xhsensgcdf	utils
poplarcdf	utils
dmdrosophila2dmrefseqprobe	R
dmdrosophila2dmrefseqprobe	matchprobes
hs95av2hsrefseqprobe	R
hs95av2hsrefseqprobe	matchprobes
hs133xhsentrezg	utils
hgug4100a	R
mm11ksubammugcdf	utils
mm74av2mmensg	utils
rgug4130a	R
hsex10stv2hsenstprobe	R
hsex10stv2hsenstprobe	matchprobes
mgu74cprobe	R
mgu74cprobe	matchprobes
mwgcod	R
hsfocushsenseprobe	R
hsfocushsenseprobe	matchprobes
mm24kresogen	R
hs133bhsentrezgcdf	utils
mmex10stv1mmense	utils
mm11ksubammenstprobe	R
mm11ksubammenstprobe	matchprobes
hs133av2ptensgprobe	R
hs133av2ptensgprobe	matchprobes
osahomology	R
drzebrafishdrense	utils
mm430mmrefseqcdf	utils
cfcanine2cfenstcdf	utils
hs133aptenstcdf	utils
rn230rnenseprobe	R
rn230rnenseprobe	matchprobes
mm430bmmenseprobe	R
mm430bmmenseprobe	matchprobes
mm74av1mmug	utils
bovinecdf	utils
drzebrafishdrensecdf	utils
dmgenome1dmensecdf	utils
rae230bcdf	utils
hu6800cdf	utils
ath1attairprobe	R
ath1attairprobe	matchprobes
canineprobe	R
canineprobe	matchprobes
mmex10stv1mmensg	utils
hs133ahsrefseqcdf	utils
cfcanine2cfenseprobe	R
cfcanine2cfenseprobe	matchprobes
rnex10stv1rnugcdf	utils
mm74av2mmrefseq	utils
hs133ahsenstcdf	utils
mm430mmrefseq	utils
drzebrafishdrensg	utils
ggchickenggenstcdf	utils
mm74cv2mmenstcdf	utils
zebrafish	R
hsfocusptensgprobe	R
hsfocusptensgprobe	matchprobes
mgug4121a	R
BSgenome.Dmelanogaster.UCSC.dm2	R
BSgenome.Dmelanogaster.UCSC.dm2	methods
BSgenome.Dmelanogaster.UCSC.dm2	Biostrings
BSgenome.Dmelanogaster.UCSC.dm2	BSgenome
scehomology	R
hs133bhsenstprobe	R
hs133bhsenstprobe	matchprobes
mm11ksubammugprobe	R
mm11ksubammugprobe	matchprobes
ggchickenggenseprobe	R
ggchickenggenseprobe	matchprobes
mm430mmense	utils
mm74cv2mmenstprobe	R
mm74cv2mmenstprobe	matchprobes
dmdrosophila2dmenst	utils
tomatocdf	utils
mm74av1mmenst	utils
mgu74bv2probe	R
mgu74bv2probe	matchprobes
rn230arnenstcdf	utils
hgu133acdf	utils
BSgenome.Hsapiens.UCSC.hg16	R
BSgenome.Hsapiens.UCSC.hg16	methods
BSgenome.Hsapiens.UCSC.hg16	Biostrings
BSgenome.Hsapiens.UCSC.hg16	BSgenome
hs95av2hsenstprobe	R
hs95av2hsenstprobe	matchprobes
vvihomology	R
atgenomeattigrprobe	R
atgenomeattigrprobe	matchprobes
cfcanine2cfense	utils
rnex10stv1rnensgcdf	utils
mm74cv2mmentrezgcdf	utils
hs133ahsense	utils
rae230a	R
dmdrosophila2dmenstprobe	R
dmdrosophila2dmenstprobe	matchprobes
hsex10stv2hsenseprobe	R
hsex10stv2hsenseprobe	matchprobes
hsfocusptentrezgprobe	R
hsfocusptentrezgprobe	matchprobes
rnex10stv1rnentrezg	utils
BSgenome.Hsapiens.UCSC.hg17	R
BSgenome.Hsapiens.UCSC.hg17	methods
BSgenome.Hsapiens.UCSC.hg17	Biostrings
BSgenome.Hsapiens.UCSC.hg17	BSgenome
moe430bcdf	utils
rnex10stv1rnensgprobe	R
rnex10stv1rnensgprobe	matchprobes
mm430mmentrezgprobe	R
mm430mmentrezgprobe	matchprobes
ye6100subacdf	utils
mm430mmensg	utils
hs133xhsug	utils
mm11ksubammenseprobe	R
mm11ksubammenseprobe	matchprobes
chickencdf	utils
mm430bmmensgcdf	utils
hs133aptense	utils
rn230rnenstcdf	utils
rn230arnenstprobe	R
rn230arnenstprobe	matchprobes
rae230b	R
cfcanine2cfrefseq	utils
hs25kresogen	R
mm430bmmentrezg	utils
BSgenome.Scerevisiae.UCSC.sacCer1	R
BSgenome.Scerevisiae.UCSC.sacCer1	methods
BSgenome.Scerevisiae.UCSC.sacCer1	Biostrings
BSgenome.Scerevisiae.UCSC.sacCer1	BSgenome
cfcanine2cfugprobe	R
cfcanine2cfugprobe	matchprobes
BSgenome.Hsapiens.UCSC.hg18	R
BSgenome.Hsapiens.UCSC.hg18	methods
BSgenome.Hsapiens.UCSC.hg18	Biostrings
BSgenome.Hsapiens.UCSC.hg18	BSgenome
hs133phsug	utils
zebrafishcdf	utils
rat2302cdf	utils
moe430bprobe	R
moe430bprobe	matchprobes
rn230rnugcdf	utils
cfcanine2cfensg	utils
hgu95bprobe	R
hgu95bprobe	matchprobes
yeast2cdf	utils
hgu133plus2probe	R
hgu133plus2probe	matchprobes
hs133ahsensg	utils
mm74av1mmrefseqcdf	utils
mmex10stv1mmenstprobe	R
mmex10stv1mmenstprobe	matchprobes
celhomology	R
cfahomology	R
hsfocusptenstcdf	utils
klahomology	R
mm74bv2mmensecdf	utils
rn230brnug	utils
hs133xhsrefseqcdf	utils
hs133aptensg	utils
hgu133a2probe	R
hgu133a2probe	matchprobes
citrusprobe	R
citrusprobe	matchprobes
hs133ahsugprobe	R
hs133ahsugprobe	matchprobes
hsex10stv2ptensgprobe	R
hsex10stv2ptensgprobe	matchprobes
ggchickenggugprobe	R
ggchickenggugprobe	matchprobes
mm74cv2mmugprobe	R
mm74cv2mmugprobe	matchprobes
dmgenome1dmenst	utils
rn34arnentrezgprobe	R
rn34arnentrezgprobe	matchprobes
hgu95av2	R
mm74av2mmenstprobe	R
mm74av2mmenstprobe	matchprobes
BSgenome.Celegans.UCSC.ce2	R
BSgenome.Celegans.UCSC.ce2	methods
BSgenome.Celegans.UCSC.ce2	Biostrings
BSgenome.Celegans.UCSC.ce2	BSgenome
mmex10stv1mmensecdf	utils
hs133bhsenseprobe	R
hs133bhsenseprobe	matchprobes
hsfocushsenstcdf	utils
mm74cv2mmentrezgprobe	R
mm74cv2mmentrezgprobe	matchprobes
mm11ksubbmmenstcdf	utils
mm74cv2mmenseprobe	R
mm74cv2mmenseprobe	matchprobes
hs133xhsense	utils
ratLLMappings	R
dmdrosophila2dmug	utils
hgug4101a	R
mm74bv2mmensgprobe	R
mm74bv2mmensgprobe	matchprobes
rgu34cprobe	R
rgu34cprobe	matchprobes
rn230arnugprobe	R
rn230arnugprobe	matchprobes
hs133xptense	utils
hsex10stv2hsenst	utils
hs95av2hsenseprobe	R
hs95av2hsenseprobe	matchprobes
mgu74bv2cdf	utils
rn34arnrefseqcdf	utils
hsex10stv2ptenst	utils
ygs98	R
dmdrosophila2dmenseprobe	R
dmdrosophila2dmenseprobe	matchprobes
hthgu133acdf	utils
agprobe	R
agprobe	matchprobes
hsfocushsentrezgprobe	R
hsfocushsentrezgprobe	matchprobes
hs133xhsensg	utils
drzebrafishdrensgcdf	utils
dmgenome1dmensgcdf	utils
hu35ksubdprobe	R
hu35ksubdprobe	matchprobes
egohomology	R
hs133bptensgprobe	R
hs133bptensgprobe	matchprobes
rtu34	R
rn230rnugprobe	R
rn230rnugprobe	matchprobes
maizeprobe	R
maizeprobe	matchprobes
rn230arnenseprobe	R
rn230arnenseprobe	matchprobes
drzebrafishdrentrezg	utils
hs133xptensg	utils
hs133pptenstcdf	utils
hgu133a2	R
mm74av2mmenst	utils
vvgrapevvtigrprobe	R
vvgrapevvtigrprobe	matchprobes
hsex10stv2hsugcdf	utils
hs133bptenstcdf	utils
paeg1acdf	utils
mm11ksubammug	utils
mm430ammugcdf	utils
ggchickenggrefseq	utils
hs95av2ptensgprobe	R
hs95av2ptensgprobe	matchprobes
hs133av2hsrefseqcdf	utils
mmex10stv1mmenseprobe	R
mmex10stv1mmenseprobe	matchprobes
mm430ammensgprobe	R
mm430ammensgprobe	matchprobes
hs133ahsrefseqprobe	R
hs133ahsrefseqprobe	matchprobes
mgug4122a	R
hs133bhsense	utils
hs133phsenstcdf	utils
hs133bptentrezgcdf	utils
hgu133aprobe	R
hgu133aprobe	matchprobes
hs133bhsenstcdf	utils
dmdrosophila2dmrefseq	utils
hs133bptense	utils
mm74av2mmenseprobe	R
mm74av2mmenseprobe	matchprobes
mm11ksubammense	utils
hu35ksubbcdf	utils
mmex10stv1mmenst	utils
dmdrosophila2dmenstcdf	utils
hsfocushsugprobe	R
hsfocushsugprobe	matchprobes
atgenomeattigr	utils
hgu133atagcdf	utils
mm11ksubbmmugprobe	R
mm11ksubbmmugprobe	matchprobes
drzebrafishdrenst	utils
hgu133a2cdf	utils
drzebrafishdrenstprobe	R
drzebrafishdrenstprobe	matchprobes
hs133phsentrezgcdf	utils
hs95av2hsugcdf	utils
hs133bhsensg	utils
hs95av2hsentrezgcdf	utils
ye6100subccdf	utils
rn34arnrefseqprobe	R
rn34arnrefseqprobe	matchprobes
hsfocushsrefseqcdf	utils
hsex10stv2hsug	utils
rn230brnenstcdf	utils
hs133phsense	utils
hs133bptensg	utils
mm11ksubammensg	utils
mgrhomology	R
cinhomology	R
rn230rnrefseqcdf	utils
mu6500subacdf	utils
hs133pptense	utils
tomatoprobe	R
tomatoprobe	matchprobes
rgu34acdf	utils
mm430bmmrefseqcdf	utils
osriceosrefseqprobe	R
osriceosrefseqprobe	matchprobes
mi16cod	R
dmdrosophila2dmugcdf	utils
bovineprobe	R
bovineprobe	matchprobes
hgu95av2cdf	utils
m20kcod	R
mm74bv2mmensgcdf	utils
mm11ksubbmmugcdf	utils
gmahomology	R
mgu74bcdf	utils
mm74av1mmugcdf	utils
cfcanine2cfrefseqcdf	utils
ri16cod	R
hu6800subbcdf	utils
hs133phsensg	utils
rn34arnenstcdf	utils
mm74bv2mmentrezg	utils
mm74av1mmentrezgprobe	R
mm74av1mmentrezgprobe	matchprobes
mm430mmenst	utils
hsfocushsugcdf	utils
test3probe	R
test3probe	matchprobes
soybeanprobe	R
soybeanprobe	matchprobes
ratCHRLOC	R
mmex10stv1mmensgcdf	utils
humanLLMappings	R
hs133pptensg	utils
mm74av1mmenstcdf	utils
dmgenome1dmenstprobe	R
dmgenome1dmenstprobe	matchprobes
hgu95bcdf	utils
mgu74bprobe	R
mgu74bprobe	matchprobes
rat2302	R
mmex10stv1mmentrezg	utils
hs133xhsugcdf	utils
hs133phsugprobe	R
hs133phsugprobe	matchprobes
ggchickenggrefseqcdf	utils
cfcanine2cfenst	utils
mm430ammrefseqprobe	R
mm430ammrefseqprobe	matchprobes
mm74av2mmug	utils
mm430mmensgprobe	R
mm430mmensgprobe	matchprobes
hs133phsugcdf	utils
hs133bhsugprobe	R
hs133bhsugprobe	matchprobes
hs133ahsenst	utils
rnex10stv1rnentrezgcdf	utils
hs133ahsug	utils
dmdrosophila2dmugprobe	R
dmdrosophila2dmugprobe	matchprobes
mm11ksubbmmrefseq	utils
hs133aptenst	utils
mgug4104a	R
hs133av2hsentrezgcdf	utils
test1cdf	utils
adme16cod	R
rn230arnugcdf	utils
maizecdf	utils
pfahomology	R
xlahomology	R
ggahomology	R
plasmodiumanophelesprobe	R
plasmodiumanophelesprobe	matchprobes
drzebrafishdrenseprobe	R
drzebrafishdrenseprobe	matchprobes
hs133ahsensgprobe	R
hs133ahsensgprobe	matchprobes
hsex10stv2hsrefseqcdf	utils
rn34arnrefseq	utils
mm74av1mmrefseq	utils
spohomology	R
gp53cdf	utils
mm11ksubammrefseqcdf	utils
ecoliasv2probe	R
ecoliasv2probe	matchprobes
rn230brnugprobe	R
rn230brnugprobe	matchprobes
mgu74av2	R
hs133aptenstprobe	R
hs133aptenstprobe	matchprobes
atgenomeattairprobe	R
atgenomeattairprobe	matchprobes
hs133av2ptenstcdf	utils
mgu74cv2probe	R
mgu74cv2probe	matchprobes
hs95av2hsense	utils
ggchickenggug	utils
hgu95eprobe	R
hgu95eprobe	matchprobes
hs133pptentrezgprobe	R
hs133pptentrezgprobe	matchprobes
canine2probe	R
canine2probe	matchprobes
mm11ksubbmmense	utils
hsfocushsense	utils
mguatlas5k	R
hwgcod	R
mm11ksubbmmenstprobe	R
mm11ksubbmmenstprobe	matchprobes
rn230arnense	utils
hs95av2ptense	utils
ath1attigr	utils
yeast2probe	R
yeast2probe	matchprobes
mm430bmmrefseq	utils
hsfocusptense	utils
hs133av2hsenstcdf	utils
agcdf	utils
rn34arnugprobe	R
rn34arnugprobe	matchprobes
hs133xhsenst	utils
canine2	R
hs95av2hsensg	utils
hu35ksubdcdf	utils
mm74av1mmugprobe	R
mm74av1mmugprobe	matchprobes
hu35ksuba	R
dmgenome1dmenseprobe	R
dmgenome1dmenseprobe	matchprobes
mm11ksubbmmensg	utils
humanCHRLOC	R
hs133xptenst	utils
hsfocushsensg	utils
cfcanine2cfrefseqprobe	R
cfcanine2cfrefseqprobe	matchprobes
hs133phsenstprobe	R
hs133phsenstprobe	matchprobes
hs133bhsrefseqcdf	utils
rn230arnensg	utils
hs95av2ptensg	utils
ncrhomology	R
mm430mmug	utils
btahomology	R
mm74cv2mmrefseqcdf	utils
ath1121501cdf	utils
hsfocusptensg	utils
ricecdf	utils
hu35ksubb	R
mm11ksubammensecdf	utils
wheatprobe	R
wheatprobe	matchprobes
hs133av2hsugcdf	utils
drosophila2cdf	utils
moe430aprobe	R
moe430aprobe	matchprobes
hs95av2ptenstcdf	utils
hs95av2hsrefseqcdf	utils
hgu95aprobe	R
hgu95aprobe	matchprobes
atgenomeattigrcdf	utils
barley1probe	R
barley1probe	matchprobes
hu35ksubc	R
mm74av1mmensgprobe	R
mm74av1mmensgprobe	matchprobes
mu6500subccdf	utils
hguDKFZ31	R
dmdrosophila2dmrefseqcdf	utils
dmgenome1dmrefseqprobe	R
dmgenome1dmrefseqprobe	matchprobes
rgu34ccdf	utils
hgfocus	R
hs133xhsensgprobe	R
hs133xhsensgprobe	matchprobes
hsfocushsrefseq	utils
GO	R
hcg110probe	R
hcg110probe	matchprobes
hu35ksubd	R
hs95av2hsenstcdf	utils
mm430mmentrezgcdf	utils
hs133bhsrefseq	utils
hs133aptenseprobe	R
hs133aptenseprobe	matchprobes
rn230rnrefseqprobe	R
rn230rnrefseqprobe	matchprobes
hs133xptenstprobe	R
hs133xptenstprobe	matchprobes
BSgenome.Mmusculus.UCSC.mm7	R
BSgenome.Mmusculus.UCSC.mm7	methods
BSgenome.Mmusculus.UCSC.mm7	Biostrings
BSgenome.Mmusculus.UCSC.mm7	BSgenome
mu11ksubbprobe	R
mu11ksubbprobe	matchprobes
rn230arnrefseqcdf	utils
osriceosrefseq	utils
hu6800subdcdf	utils
mm74bv2mmug	utils
hcg110	R
ecoliasv2cdf	utils
hs133bhsenst	utils
mm74av2mmentrezgprobe	R
mm74av2mmentrezgprobe	matchprobes
hivprtplus2cdf	utils
hs133phsentrezgprobe	R
hs133phsentrezgprobe	matchprobes
mm11ksubbmmenseprobe	R
mm11ksubbmmenseprobe	matchprobes
cfcanine2cfensecdf	utils
hs133xptentrezgprobe	R
hs133xptentrezgprobe	matchprobes
mm74av1mmentrezgcdf	utils
hs133aptensecdf	utils
hs133bptenst	utils
mu19ksubbcdf	utils
rn230brnenstprobe	R
rn230brnenstprobe	matchprobes
mm11ksubammenst	utils
hsex10stv2ptenstcdf	utils
hgu95dcdf	utils
mmex10stv1mmrefseqcdf	utils
mm74cv2mmrefseqprobe	R
mm74cv2mmrefseqprobe	matchprobes
rgu34bprobe	R
rgu34bprobe	matchprobes
hs133av2hsugprobe	R
hs133av2hsugprobe	matchprobes
drzebrafishdrug	utils
hs133pptentrezgcdf	utils
hs95av2ptentrezgcdf	utils
mm430mmugcdf	utils
mm430ammenstcdf	utils
rn34arnensgprobe	R
rn34arnensgprobe	matchprobes
mgu74av2cdf	utils
ath1121501probe	R
ath1121501probe	matchprobes
rn230rnug	utils
osriceostigr	utils
citruscdf	utils
mmuhomology	R
mm74av2mmrefseqcdf	utils
hs133av2hsense	utils
hs133ahsensecdf	utils
hs133phsenseprobe	R
hs133phsenseprobe	matchprobes
indac	R
hsex10stv2hsenstcdf	utils
ggchickenggensecdf	utils
mm74av2mmenstcdf	utils
mm74cv2mmensecdf	utils
test3cdf	utils
ath1atrefseq	utils
hs133av2ptense	utils
hs133phsenst	utils
mm74av2mmrefseqprobe	R
mm74av2mmrefseqprobe	matchprobes
mm430ammentrezgcdf	utils
hu35ksubcprobe	R
hu35ksubcprobe	matchprobes
rn230brnense	utils
hs133pptenst	utils
mm11ksubbmmug	utils
mm430bmmugcdf	utils
mm430mmenstcdf	utils
mm11ksubammrefseqprobe	R
mm11ksubammrefseqprobe	matchprobes
chickenprobe	R
chickenprobe	matchprobes
hgu95a	R
hs133av2hsensg	utils
rn230arnentrezgcdf	utils
atgenomeatrefseqprobe	R
atgenomeatrefseqprobe	matchprobes
poplarprobe	R
poplarprobe	matchprobes
rn230arnensecdf	utils
hs133av2hsensgprobe	R
hs133av2hsensgprobe	matchprobes
plasmodiumanophelescdf	utils
hs133xptenstcdf	utils
hs133av2ptensg	utils
bsubtilisprobe	R
bsubtilisprobe	matchprobes
rn230arnrefseqprobe	R
rn230arnrefseqprobe	matchprobes
hgu95b	R
hs95av2hsugprobe	R
hs95av2hsugprobe	matchprobes
hs133av2ptenstprobe	R
hs133av2ptenstprobe	matchprobes
mm74cv2mmense	utils
hs133pptensgprobe	R
hs133pptensgprobe	matchprobes
rn230brnensg	utils
hs133xptenseprobe	R
hs133xptenseprobe	matchprobes
rae230acdf	utils
rnohomology	R
mu11ksubbcdf	utils
hs133xhsentrezgcdf	utils
mouse430a2cdf	utils
hgfocusprobe	R
hgfocusprobe	matchprobes
hgu95c	R
hs133xhsenstcdf	utils
drosgenome1cdf	utils
hsex10stv2hsentrezgcdf	utils
rn230rnensecdf	utils
yeast2	R
rn230brnrefseq	utils
cfcanine2cfentrezgprobe	R
cfcanine2cfentrezgprobe	matchprobes
mouse430a2	R
hs133av2ptentrezgcdf	utils
hs133xhsentrezgprobe	R
hs133xhsentrezgprobe	matchprobes
rn230brnenseprobe	R
rn230brnenseprobe	matchprobes
hsfocushsensgprobe	R
hsfocushsensgprobe	matchprobes
taehomology	R
hgu95d	R
hs133av2hsrefseq	utils
mm74cv2mmensg	utils
mm430ammugprobe	R
mm430ammugprobe	matchprobes
mouseCHRLOC	R
ag	R
hsfocusptenstprobe	R
hsfocusptenstprobe	matchprobes
mm11ksubammensgcdf	utils
hsfocusptensecdf	utils
hsex10stv2hsrefseq	utils
rn230rnensgprobe	R
rn230rnensgprobe	matchprobes
hgu95e	R
hs133xhsrefseq	utils
mm430bmmensgprobe	R
mm430bmmensgprobe	matchprobes
mm11ksubammentrezg	utils
hsex10stv2hsugprobe	R
hsex10stv2hsugprobe	matchprobes
mgu74cv2	R
ath1atrefseqprobe	R
ath1atrefseqprobe	matchprobes
mm74av2mmugprobe	R
mm74av2mmugprobe	matchprobes
mm74av2mmugcdf	utils
rnu34cdf	utils
mm74cv2mmug	utils
osriceostigrcdf	utils
mm11ksubammentrezgprobe	R
mm11ksubammentrezgprobe	matchprobes
mmex10stv1mmug	utils
hs95av2ptentrezgprobe	R
hs95av2ptentrezgprobe	matchprobes
drzebrafishdrrefseqcdf	utils
drehomology	R
m10kcod	R
cfcanine2cfensgprobe	R
cfcanine2cfensgprobe	matchprobes
hs95av2hsenst	utils
hsfocushsensecdf	utils
ath1attaircdf	utils
mm430mmugprobe	R
mm430mmugprobe	matchprobes
mm11ksubbmmenst	utils
moe430acdf	utils
hsfocushsenst	utils
mm11ksubbmmensecdf	utils
rn230arnenst	utils
hs95av2ptenst	utils
r10kcod	R
hsfocusptenst	utils
xenopuslaevis	R
mm430ammug	utils
mgu74aprobe	R
mgu74aprobe	matchprobes
moe430a	R
rnex10stv1rnenstprobe	R
rnex10stv1rnenstprobe	matchprobes
ggchickenggensgprobe	R
ggchickenggensgprobe	matchprobes
hs133bhsug	utils
mm11ksubammentrezgcdf	utils
cfcanine2cfensgcdf	utils
YEAST	R
hs133av2ptenseprobe	R
hs133av2ptenseprobe	matchprobes
hs133aptensgcdf	utils
cfcanine2cfentrezg	utils
rn230brnugcdf	utils
hs133aptentrezg	utils
moe430b	R
mm11ksubammrefseq	utils
rae230bprobe	R
rae230bprobe	matchprobes
mouse430a2probe	R
mouse430a2probe	matchprobes
hs133xhsugprobe	R
hs133xhsugprobe	matchprobes
mm74cv2mmrefseq	utils
hgu133atagprobe	R
hgu133atagprobe	matchprobes
rwgcod	R
hs133pptensecdf	utils
hsex10stv2hsensgprobe	R
hsex10stv2hsensgprobe	matchprobes
rn34arnense	utils
hs133ahsensgcdf	utils
dmgenome1dmrefseqcdf	utils
rnex10stv1rnenstcdf	utils
ggchickenggensgcdf	utils
mm74cv2mmensgcdf	utils
hs133bptensecdf	utils
rnex10stv1rnug	utils
drzebrafishdrrefseqprobe	R
drzebrafishdrrefseqprobe	matchprobes
mm11ksubammensgprobe	R
mm11ksubammensgprobe	matchprobes
hs133ahsentrezg	utils
u133x3p	R
hs133phsrefseq	utils
riceprobe	R
riceprobe	matchprobes
mm74cv2mmentrezg	utils
hsex10stv2ptenstprobe	R
hsex10stv2ptenstprobe	matchprobes
hsfocusptenseprobe	R
hsfocusptenseprobe	matchprobes
mm430bmmenstcdf	utils
barley1cdf	utils
hs133phsensecdf	utils
hgubeta7	R
hgu95dprobe	R
hgu95dprobe	matchprobes
celeganscdf	utils
hs133bhsensecdf	utils
drosophila2	R
rn34arnensg	utils
mm430ammense	utils
mm430ammrefseq	utils
rn230arnensgcdf	utils
hs95av2hsentrezgprobe	R
hs95av2hsentrezgprobe	matchprobes
dmdrosophila2dmensecdf	utils
rn230arnentrezg	utils
mm74bv2mmenstprobe	R
mm74bv2mmenstprobe	matchprobes
ecoli2probe	R
ecoli2probe	matchprobes
cfcanine2cfugcdf	utils
hs133ahsentrezgcdf	utils
hs133bhsensgprobe	R
hs133bhsensgprobe	matchprobes
rn230brnensecdf	utils
rn230rnensgcdf	utils
hgug4110b	R
rnex10stv1rnenseprobe	R
rnex10stv1rnenseprobe	matchprobes
mm430ammensg	utils
mm74cv2mmensgprobe	R
mm74cv2mmensgprobe	matchprobes
mm11ksubbmmrefseqcdf	utils
PFAM	R
PFAM	RSQLite
rn230rnentrezg	utils
hs133bptenstprobe	R
hs133bptenstprobe	matchprobes
hgu133plus2	R
hs133av2hsenst	utils
drosophila2probe	R
drosophila2probe	matchprobes
u133x3pcdf	utils
hs95av2hsensgprobe	R
hs95av2hsensgprobe	matchprobes
hs133av2ptenst	utils
sugarcanecdf	utils
medicagocdf	utils
rtu34cdf	utils
hsfocusptensgcdf	utils
dmdrosophila2dmensgprobe	R
dmdrosophila2dmensgprobe	matchprobes
rn230brnenst	utils
rnex10stv1rnrefseqprobe	R
rnex10stv1rnrefseqprobe	matchprobes
hs95av2ptenstprobe	R
hs95av2ptenstprobe	matchprobes
hsfocusptentrezg	utils
rnex10stv1rnugprobe	R
rnex10stv1rnugprobe	matchprobes
mm430ammenstprobe	R
mm430ammenstprobe	matchprobes
hgu133bcdf	utils
rn34arnensecdf	utils
hu35ksubacdf	utils
hs133phsrefseqcdf	utils
ggchickenggense	utils
xenopuslaevisprobe	R
xenopuslaevisprobe	matchprobes
hcg110cdf	utils
hs133ahsrefseq	utils
mm11ksubbmmentrezgprobe	R
mm11ksubbmmentrezgprobe	matchprobes
hsex10stv2ptenseprobe	R
hsex10stv2ptenseprobe	matchprobes
mm74av1mmensecdf	utils
rn230arnensgprobe	R
rn230arnensgprobe	matchprobes
rn230rnrefseq	utils
hs133ahsugcdf	utils
hsfocushsentrezgcdf	utils
mu11ksubaprobe	R
mu11ksubaprobe	matchprobes
drzebrafishdrenstcdf	utils
dmgenome1dmenstcdf	utils
mm430bmmugprobe	R
mm430bmmugprobe	matchprobes
hsfocushsensgcdf	utils
mm11ksubbmmensgcdf	utils
ye6100subbcdf	utils
mmex10stv1mmentrezgcdf	utils
hsfocushsentrezg	utils
canine2cdf	utils
hs133xptentrezgcdf	utils
hs133bhsrefseqprobe	R
hs133bhsrefseqprobe	matchprobes
mm74cv2mmenst	utils
mm11ksubbmmentrezg	utils
ecolicdf	utils
mm74bv2mmugcdf	utils
hsex10stv2ptentrezgcdf	utils
rnex10stv1rnense	utils
rnu34	R
vvgrapevvtigrcdf	utils
mmex10stv1mmensgprobe	R
mmex10stv1mmensgprobe	matchprobes
ggchickenggensg	utils
rnex10stv1rnentrezgprobe	R
rnex10stv1rnentrezgprobe	matchprobes
hsfocushsug	utils
rn230rnense	utils
mm74bv2mmenseprobe	R
mm74bv2mmenseprobe	matchprobes
rgu34aprobe	R
rgu34aprobe	matchprobes
hi16cod	R
vvgrapevvtigr	utils
mm74av2mmensgprobe	R
mm74av2mmensgprobe	matchprobes
rhesuscdf	utils
zebrafishprobe	R
zebrafishprobe	matchprobes
hsfocushsrefseqprobe	R
hsfocushsrefseqprobe	matchprobes
h20kcod	R
mgu74acdf	utils
hu6800subacdf	utils
rnex10stv1rnensg	utils
hs133pptensgcdf	utils
hs133av2ptensecdf	utils
hu35ksubbprobe	R
hu35ksubbprobe	matchprobes
rnu34probe	R
rnu34probe	matchprobes
xenopuslaeviscdf	utils
hs133bptenseprobe	R
hs133bptenseprobe	matchprobes
ptrhomology	R
rn230rnensg	utils
rn34arnug	utils
rn230brnrefseqcdf	utils
dmgenome1dmrefseq	utils
hs133bptensgcdf	utils
hs133pptentrezg	utils
mm430bmmense	utils
hgu95acdf	utils
ath1atrefseqcdf	utils
hs133av2ptentrezgprobe	R
hs133av2ptentrezgprobe	matchprobes
hs133bptentrezg	utils
hs133xhsrefseqprobe	R
hs133xhsrefseqprobe	matchprobes
hs133phsensgcdf	utils
hs133av2hsensecdf	utils
hs95av2ptenseprobe	R
hs95av2ptenseprobe	matchprobes
mouse4302	R
rn230arnentrezgprobe	R
rn230arnentrezgprobe	matchprobes
mm430ammentrezgprobe	R
mm430ammentrezgprobe	matchprobes
mm430ammenseprobe	R
mm430ammenseprobe	matchprobes
hs133aptentrezgprobe	R
hs133aptentrezgprobe	matchprobes
hs133bhsensgcdf	utils
hs133phsentrezg	utils
mm74bv2mmense	utils
rat2302probe	R
rat2302probe	matchprobes
hguatlas13k	R
mouse4302probe	R
mouse4302probe	matchprobes
hs133bhsentrezg	utils
mm430mmenstprobe	R
mm430mmenstprobe	matchprobes
atgenomeattair	utils
mm430bmmensg	utils
hsahomology	R
drzebrafishdrugprobe	R
drzebrafishdrugprobe	matchprobes
cMAP	R
ecoli2cdf	utils
dmgenome1dmugprobe	R
dmgenome1dmugprobe	matchprobes
dmdrosophila2dmensgcdf	utils
celegans	R
rguatlas4k	R
bsubtiliscdf	utils
mm74bv2mmenstcdf	utils
rn230arnrefseq	utils
hs133av2hsrefseqprobe	R
hs133av2hsrefseqprobe	matchprobes
xtrhomology	R
atgenomeatrefseq	utils
hgug4111a	R
mm430bmmrefseqprobe	R
mm430bmmrefseqprobe	matchprobes
hs95av2ptensecdf	utils
ygs98cdf	utils
hs133ahsenstprobe	R
hs133ahsenstprobe	matchprobes
mm74bv2mmensg	utils
rn230brnensgcdf	utils
hgu133plus2cdf	utils
mmex10stv1mmenstcdf	utils
mmex10stv1mmrefseqprobe	R
mmex10stv1mmrefseqprobe	matchprobes
ygs98probe	R
ygs98probe	matchprobes
rn230brnentrezg	utils
hsex10stv2hsrefseqprobe	R
hsex10stv2hsrefseqprobe	matchprobes
rn34arnenst	utils
agahomology	R
hs95av2hsensecdf	utils
mm430mmrefseqprobe	R
mm430mmrefseqprobe	matchprobes
mm74bv2mmentrezgprobe	R
mm74bv2mmentrezgprobe	matchprobes
drosgenome1	R
drzebrafishdrensgprobe	R
drzebrafishdrensgprobe	matchprobes
cfcanine2cfug	utils
rn34arnensgcdf	utils
hu35ksubccdf	utils
mu19ksuba	R
mm430bmmug	utils
rn34arnentrezg	utils
mm74av1mmensgcdf	utils
hs133av2hsentrezgprobe	R
hs133av2hsentrezgprobe	matchprobes
mm430ammenst	utils
u133aaofav2cdf	utils
hsex10stv2ptensecdf	utils
ggchickenggugcdf	utils
mm74av1mmentrezg	utils
mu19ksubb	R
drzebrafishdrrefseq	utils
ecoliprobe	R
ecoliprobe	matchprobes
athhomology	R
ye6100subdcdf	utils
hs95av2hsug	utils
porcineprobe	R
porcineprobe	matchprobes
mm430ammensecdf	utils
hs133aptentrezgcdf	utils
mgu74a	R
mm74bv2mmrefseq	utils
hs133ahsentrezgprobe	R
hs133ahsentrezgprobe	matchprobes
mu19ksubc	R
mm430mmenseprobe	R
mm430mmenseprobe	matchprobes
ath1attigrprobe	R
ath1attigrprobe	matchprobes
rn230rnentrezgcdf	utils
hsex10stv2hsensecdf	utils
mu6500subbcdf	utils
mm74av2mmensecdf	utils
mm74av2mmentrezgcdf	utils
mgu74b	R
rgu34bcdf	utils
rae230aprobe	R
rae230aprobe	matchprobes
sugarcaneprobe	R
sugarcaneprobe	matchprobes
mm74bv2mmugprobe	R
mm74bv2mmugprobe	matchprobes
saureuscdf	utils
mgu74av2probe	R
mgu74av2probe	matchprobes
htratfocuscdf	utils
mm74av1mmenstprobe	R
mm74av1mmenstprobe	matchprobes
mm430mmensecdf	utils
dmgenome1dmensgprobe	R
dmgenome1dmensgprobe	matchprobes
drzebrafishdrentrezgcdf	utils
mgu74c	R
mgu74ccdf	utils
mm74cv2mmugcdf	utils
hu6800subccdf	utils
hs133ahsenseprobe	R
hs133ahsenseprobe	matchprobes
hs133xhsenstprobe	R
hs133xhsenstprobe	matchprobes
mmex10stv1mmugprobe	R
mmex10stv1mmugprobe	matchprobes
rnex10stv1rnrefseqcdf	utils
mouse4302cdf	utils
hs133av2ptensgcdf	utils
paeg1aprobe	R
paeg1aprobe	matchprobes
hs133xptensecdf	utils
mu19ksubacdf	utils
hs133av2ptentrezg	utils
hgu95ccdf	utils
mm430bmmentrezgcdf	utils
hvuhomology	R
hsfocusptentrezgcdf	utils
ath1attair	utils
ggchickenggenst	utils
wheatcdf	utils
celegansprobe	R
celegansprobe	matchprobes
hgu95cprobe	R
hgu95cprobe	matchprobes
vitisviniferaprobe	R
vitisviniferaprobe	matchprobes
hgu95av2probe	R
hgu95av2probe	matchprobes
drosgenome1probe	R
drosgenome1probe	matchprobes
hs133av2hsensgcdf	utils
rn230brnentrezgprobe	R
rn230brnentrezgprobe	matchprobes
mm430bmmentrezgprobe	R
mm430bmmentrezgprobe	matchprobes
hs133bptentrezgprobe	R
hs133bptentrezgprobe	matchprobes
rn230brnentrezgcdf	utils
hs133xhsensecdf	utils
hu6800	R
hgu133a	R
hs133av2hsentrezg	utils
osriceosrefseqcdf	utils
hgfocuscdf	utils
test2cdf	utils
hs133aptensgprobe	R
hs133aptensgprobe	matchprobes
mmex10stv1mmugcdf	utils
rn34arnenstprobe	R
rn34arnenstprobe	matchprobes
rnex10stv1rnenst	utils
dmdrosophila2dmense	utils
mm74av1mmense	utils
mouseLLMappings	R
rn230arnug	utils
rn230rnenst	utils
hgu133b	R
KEGG	R
mm11ksubbmmensgprobe	R
mm11ksubbmmensgprobe	matchprobes
mu11ksuba	R
drzebrafishdrentrezgprobe	R
drzebrafishdrentrezgprobe	matchprobes
sschomology	R
rn34arnentrezgcdf	utils
hs95av2ptensgcdf	utils
hsex10stv2ptentrezgprobe	R
hsex10stv2ptentrezgprobe	matchprobes
hs133av2hsug	utils
mm74bv2mmrefseqcdf	utils
hs95av2ptentrezg	utils
hgug4112a	R
mu11ksubb	R
dmgenome1dmug	utils
mgu74cv2cdf	utils
rn34arnugcdf	utils
dmdrosophila2dmensg	utils
mm74av1mmensg	utils
mm74av1mmenseprobe	R
mm74av1mmenseprobe	matchprobes
omyhomology	R
hs133bhsugcdf	utils
mm430bmmenst	utils
hs133av2hsenstprobe	R
hs133av2hsenstprobe	matchprobes
hs133phsensgprobe	R
hs133phsensgprobe	matchprobes
hs95av2hsensgcdf	utils
mu11ksubacdf	utils
hs133xhsenseprobe	R
hs133xhsenseprobe	matchprobes
ggchickenggrefseqprobe	R
ggchickenggrefseqprobe	matchprobes
porcinecdf	utils
mgug4120a	R
mgu74bv2	R
u133x3pprobe	R
u133x3pprobe	matchprobes
mm11ksubbmmrefseqprobe	R
mm11ksubbmmrefseqprobe	matchprobes
hs95av2hsentrezg	utils
hu6800probe	R
hu6800probe	matchprobes
hs133pptenstprobe	R
hs133pptenstprobe	matchprobes
mm74bv2mmrefseqprobe	R
mm74bv2mmrefseqprobe	matchprobes
ath1attigrcdf	utils
mm74bv2mmenst	utils
vitisviniferacdf	utils
hsex10stv2ptensgcdf	utils
LogitBoost	NONE
codetools	R
RGtk	R
XML	R
XML	methods
SJava	R
RMySQL	R
RMySQL	methods
RMySQL	DBI
SSOAP	R
SSOAP	methods
SSOAP	XML
SSOAP	RCurl
RCurl	methods